KEGG   Penaeus vannamei (Pacific white shrimp): 113800194
Entry
113800194         CDS       T06111                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB9-like
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
pvm  Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03020  RNA polymerase
pvm03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pvm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    113800194
  09124 Replication and repair
   03420 Nucleotide excision repair
    113800194
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pvm03021]
    113800194
   03400 DNA repair and recombination proteins [BR:pvm03400]
    113800194
Transcription machinery [BR:pvm03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     113800194
DNA repair and recombination proteins [BR:pvm03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      113800194
SSDB
Motif
Pfam: RNA_POL_M_15KD TFIIS_C DZR Zn_ribbon_recom
Other DBs
NCBI-GeneID: 113800194
NCBI-ProteinID: XP_027206721
LinkDB
Position
Unknown
AA seq 128 aa
MSLMAKGGGDGPGFVGIRFCQECNNMLYPKEDKENKILLYACRNCDYKMPTENNCIYVNK
LMHEIDELRHINPEVIQDPTLPRTDDHPCPRCSTRDAVFFQAQTRRAEDEMRLYYVCCNS
ECTHRWTE
NT seq 387 nt   +upstreamnt  +downstreamnt
atgagtcttatggcaaaaggtggaggagatggaccaggttttgtcggcatccgtttctgt
caggagtgtaacaatatgttgtacccaaaagaagacaaggaaaacaagatattgctttat
gcctgcaggaactgtgattacaaaatgcccacagaaaataattgtatttatgtcaacaag
ttgatgcatgaaattgatgaactcaggcacattaacccagaagtgatacaggacccaaca
ctgccaaggacagacgaccatccatgcccaaggtgtagcacacgcgatgcggtattcttc
caagcccagaccaggagagctgaagatgagatgagactgtactatgtatgttgcaacagt
gagtgcacacatcgttggactgagtaa

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