Penaeus vannamei (Pacific white shrimp): 113800828
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Entry
113800828 CDS
T06111
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase III subunit RPC1-like
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
113800828
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvm03021
]
113800828
Enzymes [BR:
pvm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
113800828
Transcription machinery [BR:
pvm03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
113800828
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
GldM_1st
Motif
Other DBs
NCBI-GeneID:
113800828
NCBI-ProteinID:
XP_027207425
LinkDB
All DBs
Position
Unknown
AA seq
1178 aa
AA seq
DB search
MKEQYRETDVVRNILDIQFGVLSAQDMQQCSHAHIVSSELYNPNANAREPASHGVLDRRM
GTSQKDVTCETCGKNLSDCIGHYGYLDLARPVFHVGYFKNTIHILQNICKFCAHVLLKPK
DKLALCEQSKRLSSYLQKKALYKRVNELCKKMSLCPYCSARNGTVKKLPPLKIVHERFKT
VKKGDPLLTDYFTQFDTALEYNKELEAQLASNVVEFLNPSQVLDLFERIPLSDLPLLCMD
QQFSHPKDLILTRLLVPPNCIRPSVISELKSGTNEDDITVMLTEIIFLNNLINKRSSGKV
QSIQDSWEHLQLHVAFLMNSEISVPHDLNMARKSTRGFVQRLKGKQGRFRGNLSGKRVDF
SSRTVISPDPNLRINEVGVPVEVAKQLSYPEKVTSHNINLMRQLVRNGPDVHPGALFVEP
KSTPGIKKSMRYVHRERMANELKQGDIIERHLMDGDIVLYNRQPSLHKMSIMSHRVRVLP
WRTFRFNECVCTPYNADFDGDEMNLHVPQTEEARAEALVLMGVTSNLVTPRHGALIIGAT
QDFITGSYLLTQKDQFFDKEHTCALVASILAGKESDYKVDLPPPAIMKHNDPSYTAQYTE
STNNYHIALRSTNSRSCQDQGSSPGSRNSLMKGSKHESTAEHSYGDDTINLHTQSSFFIS
LLGDNMLVYAVNLSSTTQDHREKQLRDTKELSKKHLITHHTQHTRNYNHTHYSTTPRTAA
MTNLDRGRHLTARPTADPRDSYTSHKPIHGDKHTGADKCYAAHGERQKTNAALIRTQQAI
HRDHMVIYKRVPIQEIFEDRSIMLFRRAYAGYLKLTPEVDECLYESGTAVVVSQHEELLN
HHGYIFFWATRTTISAARTTGGALCWLRHLRLSKDLFFDDLVLMSLYCRASVNICVETKS
RTPPCYIVDSQYDRCICRAITLVEYEVIHNLSVEEKSQTIFMLRSTHRGLPANYLHIPTH
ISPLKVVYFILHLLRSIAAATCNSHSLTILSHLTCRRWDNRGDGLDLHLLEIEISALQPV
AQVGWTVYRGVQYTYPTCPRSTISSYSQHLPKSSSIFASRLTTANPYISESCPQIRNDTS
GVSQYELLVEGDNLQEVIATYGVDGTRCTSNNTYEVFTSLGIEAARATIIKEITVTMETH
GLSVDHRHVMLLADLMTCRGQVFARITRHGLSKMKSDA
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgaaggagcagtatcgggagacagatgttgtccgcaacatcctggacatccagtttggg
gtgctgtcagcacaggacatgcagcagtgcagtcatgctcacattgtatcatcggaactc
tataacccgaatgcaaatgccagagaaccagcctctcatggtgtcttggatagaagaatg
ggtactagtcaaaaagatgtgacatgtgagacctgcggcaagaatttatcagactgcatt
ggtcattatggttacctggaccttgctcgaccagtgttccatgtcggctacttcaagaat
acaatccatatcctccaaaatatttgtaagttctgtgcacatgtacttctcaaaccaaaa
gataaacttgcgctctgtgagcagtcaaagagattaagctcatacctgcagaagaaggct
ctatacaagcgtgttaatgaactatgcaagaagatgagcttgtgtccatactgcagcgcc
agaaatgggactgtgaaaaaactgccacctctcaagattgttcatgagaggttcaaaaca
gtcaagaagggggatcctttgttgacagactattttactcaatttgacacagcattagag
tacaacaaagagttagaagcacagctggcctccaatgttgtggagttcctgaatcctagt
caggtccttgatctgtttgagaggattcccctctcagatttgccactcttatgcatggac
caacaattttcgcatccgaaggacctcattcttacgcgactgttagtccctccaaactgc
ataaggccatctgtgatctcagaactaaaatctggaacgaatgaggatgacattacggtc
atgcttactgagattatattcctgaacaatctgatcaacaagagaagctctgggaaagtg
cagagcatccaagactcttgggaacatctgcagcttcatgtggcattcttgatgaattca
gagatatcggtgccgcatgatctgaatatggcgcggaaatcaacacgagggtttgtccag
aggttaaagggtaagcagggccgtttccgaggtaacttgtctggaaagcgtgtcgatttc
tccagccgaactgtcatctctccggatcccaatctcagaatcaatgaggtgggtgtgcca
gtggaagtagcaaagcagctgtcttaccctgagaaagtgacgtcacacaatatcaacctc
atgcgtcagctggtgcggaatggcccagacgtccatcctggggccctctttgtggagcca
aagtcgacgcccggcatcaagaaatcaatgagatacgtgcatagggagcgaatggccaat
gagctgaaacaaggggacattattgagagacacctgatggatggagacattgtcctatac
aaccgacagccttccttgcacaaaatgagcatcatgtcccacagagttagggttctccca
tggaggacctttaggttcaacgagtgtgtctgtactccttacaatgctgattttgatggg
gatgagatgaaccttcatgtgccacagacagaagaggcgagggcagaggcattggtgctc
atgggggtaacctccaacctggtgaccccaagacacggagcgctcatcattggtgcaacg
caggatttcatcacaggctcctacctccttacacagaaggatcagttctttgataaggaa
cacacctgtgcccttgtggcctccatcttggcagggaaggaatctgactataaagtagat
ctaccgcctcctgctattatgaagcacaatgacccgagctacacagcacagtacacggag
tctaccaacaactatcacattgcattgcggagcacgaactctcgatcatgccaggatcag
ggctcctcaccaggaagcaggaactccttgatgaagggctctaaacacgagagcacagcg
gagcactcttacggtgacgacacaatcaatctacacacacaatcaagtttctttatttca
ttgttaggagacaatatgcttgtttatgcagtaaatctatcaagcacaacgcaagatcat
agagagaaacaactgcgcgacacaaaggagttgagcaaaaagcatctcatcactcatcac
acacagcacacgcgcaattacaaccacacacactatagcacaacgccacgcacagcagcc
atgaccaacctagaccgaggcagacaccttacagcacgacccacagctgatcctagggac
agctacacaagtcacaaacccatccacggagacaaacacacaggagctgacaagtgctat
gctgctcatggagagcggcagaagaccaatgcagcactcatcaggactcagcaggccatc
catagagatcacatggtaatatacaagagagtccccatacaagagatttttgaggaccga
agcatcatgctctttcgccgagcgtacgctggatatctgaaattgacaccagaggtagat
gaatgtttgtatgagtcaggtacagcagttgtggtctcacagcacgaggagctcctcaat
caccacggatatattttcttttgggcgactcgcactaccataagtgctgcgagaacgacc
ggaggcgcgctctgttggttgaggcatctccggctgtccaaagaccttttctttgatgat
cttgtgcttatgtctctctattgtcgcgcgagtgtcaatatctgcgtagagacgaagtcc
agaacgccaccctgttacattgtggactcgcagtatgatcgatgtatttgtcgcgctatc
acacttgtagagtatgaagtaatccataacttatctgtggaggagaagtcacaaactatt
tttatgcttcgatcgacacacagaggtttacccgcgaactatcttcatattcctacccat
atatcacctctgaaagtcgtctactttatcttgcatctattgcgttctattgcagcggca
acatgcaactcccactcgctcacaatactgtcccatctcacgtgtcgaagatgggataat
agaggtgatggtctagacctccacctactggaaatagagatctctgccttacagccagtt
gcacaggtgggatggactgtgtatcgaggagtacagtacacctatcctacttgtccgcgc
agcaccatatcaagctacagtcaacatctacctaaaagcagttcaatattcgcatcaagg
ttgactactgccaatccgtacatatcggagagctgtcctcaaatcagaaatgacacgagt
ggggtttcccagtacgaactgcttgtggaaggggacaacttgcaggaagtcattgcaacc
tatggtgttgatggcacacgttgcacctcaaacaacacgtatgaagtcttcacctcatta
gggattgaggcagcaagagcaacaatcatcaaagagatcacagtgactatggagactcac
ggcctgagtgtggaccacaggcatgtaatgctactggctgacttgatgacctgtcgtggc
caagtatttgctcggatcactcgccatgggctgtccaagatgaagtcagatgcttga
DBGET
integrated database retrieval system
