Phaseolus vulgaris (common bean): PHAVU_009G155200g
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Entry
PHAVU_009G155200g CDS
T03093
Name
(RefSeq) hypothetical protein
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03030
DNA replication
pvu03410
Base excision repair
pvu03420
Nucleotide excision repair
pvu03430
Mismatch repair
pvu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PHAVU_009G155200g
03410 Base excision repair
PHAVU_009G155200g
03420 Nucleotide excision repair
PHAVU_009G155200g
03430 Mismatch repair
PHAVU_009G155200g
03440 Homologous recombination
PHAVU_009G155200g
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pvu03032
]
PHAVU_009G155200g
03400 DNA repair and recombination proteins [BR:
pvu03400
]
PHAVU_009G155200g
Enzymes [BR:
pvu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PHAVU_009G155200g
DNA replication proteins [BR:
pvu03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
PHAVU_009G155200g
DNA repair and recombination proteins [BR:
pvu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
PHAVU_009G155200g
MMR (mismatch excision repair)
DNA polymerase delta complex
PHAVU_009G155200g
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
DNA_pol_B_2
Motif
Other DBs
NCBI-GeneID:
18620268
NCBI-ProteinID:
XP_007137783
UniProt:
V7AVV5
LinkDB
All DBs
Position
9:22552261..22566378
Genome browser
AA seq
1079 aa
AA seq
DB search
MSASRKRAAAPPKPPPSKQALLTQEEDMDEDVFMEQTLISEDEESMILRDIEQRQALAAR
LSKWARPPLSADYVKQVVFQQLEIDYVIGESHRELLPNLSGPAAIIRIFGVTKEGHSVCC
NVHGFEPYFYICCPPGMGPDDISHFHQTLEGRMREANRNSNVGKFVRRIEMVQRRSIKYY
QQSDSQSFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFWTYESNVLFALRFMIDCNIV
GGNWIEIPAGKYKKIAKSLSYCQLEFDCLYSDLISHAPEGEYSKMAPFRILSFDIECAGR
KGHFPEPSHDPVIQIANLVTLQGEDQPLIRNVMTLKSCSPIVGVDVMSFDTEREVLLAWR
DLILEVDPDIIIGYNICKFDLPYLIERAANLKIAEFPILGRIRNSRVRVKDTTFSSRQYG
TRESKEVAVEGRVQFDLLQVMQRDYKLSSYSLNSVSAHFLSEQKEDVHHSIISELQNGTP
ETRRRLAVYCLKDAYLPQRLLDKLMLIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRK
ARQKNLVIPSVKQVGSEQGTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCT
LVTSEDARKLNIPPESVNRTPSGETFVKANLQKGILPEILEELLTARKRAKADLKEARDP
LERAVLDGRQLALKISANSVYGFTGATIGQLPCLEISSSVTSYGRQMIEHTKKLVGDKFT
TLNGYEHNVEVIYGDTDSVMVQFGVSSVEQAMNLGREAAEYISGTFTKPIKLEFEKVYYP
YLLISKKRYAGLFWTKPDNFDKMDTKGIETVRRDNCLLVKNLVNDCLHKILIDRDIPGAV
QYVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDR
VPYVIIKAAKGAKAYEKSEDPIYVLENNIPIDPQYYLENQISKPILRIFEPILKNASREL
LHGDHTRSISISTPSNIGLLKYAKRNLTCIGCKAVLGKDLHTVCSHCKGREAELYCKTVS
QVSELEKLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMSEAKSQLDRWSF
NT seq
3240 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcctcccgaaagcgcgcggcggcgccgccgaaacctccgccgtcgaagcaagcc
ttattgactcaggaagaggacatggacgaagacgtgtttatggagcaaaccctcatttct
gaagacgaagagtccatgattctccgcgacatcgagcagcgccaggccctcgctgctcgc
ctatccaagtgggcgcgtcctccactatcggccgattacgtcaaacaagtcgtttttcag
cagctggagattgattacgtgatcggggagagtcacagggagttgctgccgaacttgtct
ggacctgctgccattatcagaatctttggagttacgaaggaaggacacagtgtttgctgc
aatgttcatgggtttgaaccatatttctacatctgttgccctcctggaatgggtccagat
gatatctctcattttcaccaaacacttgagggaaggatgagagaagccaatagaaatagt
aatgtaggaaaattcgttcgccgcattgaaatggtgcagaggagaagtattaagtactat
cagcaatctgattcccagtcctttctcaaaattgtagttgcactcccaacaatggttgcc
agctgccgtggtattcttgataggggtattcagcttgatggtctgggaatgaagagcttc
tggacttatgaaagcaatgtactttttgccctacggttcatgattgattgcaacatagta
ggtggaaattggattgaaattccagcaggaaaatataagaagatagcgaaaagcttgtct
tattgccagttggagtttgattgcctgtattctgatttgattagtcatgctccagaaggg
gaatattcaaagatggctccatttcgcatattgagttttgacattgagtgtgctggtcgt
aaaggtcattttcccgagcctagccatgatcctgttatccagattgctaatttggttact
ttacaaggagaggaccagccacttattcgtaatgtgatgacccttaaatcatgctctcct
attgttggtgttgatgtgatgtcatttgatacggaaagagaagtcctgctagcttggagg
gatttaattctggaagtggaccctgatattattattggatataacatctgcaaatttgac
ctgccatatcttattgagagagctgcaaacctgaagatagcagaatttcctattcttggc
cgtattaggaacagtagagttcgggtaaaggatacaactttctcgtcaaggcagtacggg
accagggaaagcaaagaagttgcagtagaagggagagttcagtttgacttactccaggtt
atgcagagagactacaaattaagttcgtattcactaaattctgtctcagcacacttcctt
tctgagcagaaagaggatgtccatcattctatcatatctgaacttcagaatggaacccca
gaaactaggaggcgtcttgctgtgtattgtttgaaggatgcatacctccctcagcgactt
ttggataaattgatgctcatttacaactatgtggagatggctcgagtaacaggtgttcca
atttcttttctactttccagaggccaaagcattaaggtactttcacaacttcttaggaag
gcaagacagaagaatctggtcattcctagtgtcaaacaggtcgggtctgaacaaggaaca
ttcgaaggtgccactgtattggaggcaagggctggattttatgaaaaaccaattgctacg
ttagattttgcatccctgtatccatctattatgatggcctataatttatgttattgcaca
ctggtgacttctgaagatgctcgcaagctgaacatccctccggagtccgtgaacagaact
ccatctggtgaaacatttgttaaagcaaatctgcagaagggaatacttcctgaaatactt
gaagagctattaacagcccgaaaaagggcaaaagcagacttaaaggaggcgagggatccc
ctggagagggcagtactagatggtaggcagctggccctgaaaattagtgcaaattctgtg
tatgggtttactggggctaccattggtcagttaccatgtttggagatatcatcgagtgta
acaagctatggtcgacaaatgattgagcacacaaaaaaacttgtgggagataaatttacg
acacttaatggctatgagcacaatgttgaggtaatatatggagacacagattcagtcatg
gtacaatttggtgtttcttctgtagaacaggctatgaacttggggagagaagctgccgaa
tatataagtggaactttcacaaaacccatcaaactagaatttgagaaggtttattatcca
tatctattgattagcaagaagagatatgctggtttgttttggacaaaaccagacaacttt
gacaaaatggacactaaaggtattgaaacagttcgaagagacaattgtttgttggtaaaa
aacctggtgaatgattgtcttcacaaaatactgattgacagggacattccgggggctgtc
cagtatgtcaagaacgcaatttcagatcttctcatgaatcggatggatttatctctgctg
gttattacaaagggtttaacaaagacaggagatgattatgaagtaaaggcagctcatgtt
gaacttgctgaaaggatgcgcaagcgagatgctgccactgctccaaatgttggagataga
gtaccttatgtaattatcaaagctgcaaaaggtgcaaaggcgtatgagaaatcagaggac
cctatttatgttctagagaacaacattcctatagatcctcaatactatcttgagaatcaa
attagcaagccgattctgagaatttttgagccaattctgaagaatgctagcagagaactt
ctccatggagatcatacaagatctatttcaatttctactccgtcaaacattggcttattg
aaatatgctaagagaaaccttacctgcattggctgtaaagctgtactaggcaaggatctt
cacacagtctgttcacattgcaaaggaagggaagctgagctatactgtaaaacagtatct
caagtgtctgagttggagaagctttttgggaggttgtggacacagtgtcaggagtgccaa
ggttcacttcatcaagatgttctctgcaccagtcgggattgtccaattttttatcgacga
aaaaaggcacaaaaagatatgtccgaagcaaaatcgcaattggaccggtggagtttttaa
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integrated database retrieval system