Patella vulgata (common limpet): 126828088
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Entry
126828088 CDS
T09576
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pvul
Patella vulgata (common limpet)
Pathway
pvul03020
RNA polymerase
pvul03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pvul00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
126828088
09124 Replication and repair
03420 Nucleotide excision repair
126828088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvul03021
]
126828088
03400 DNA repair and recombination proteins [BR:
pvul03400
]
126828088
Enzymes [BR:
pvul01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
126828088
Transcription machinery [BR:
pvul03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
126828088
DNA repair and recombination proteins [BR:
pvul03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
126828088
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
EutB
VasI
Motif
Other DBs
NCBI-GeneID:
126828088
NCBI-ProteinID:
XP_050413626
EnsemblRapid:
ENSPVUG00005018069
LinkDB
All DBs
Position
1:complement(30759719..30784376)
Genome browser
AA seq
1938 aa
AA seq
DB search
MAYTGDSNAPLKIVTKVQFGILGPDEIRRMSVTEGGIKYSETTEGGRPKLCGLMDPRQGV
IDRQSRCQTCAGNMTECPGHFGHIELAKPVYHVAFMTKIMKILRCVCFYCSKILADTSSP
KIRDILSKSKGYPRKRLAHVYDLCKVRKICEGGDEMEKAGQEEENGEPKKSHGGCGRWQP
KIKKAALDLIAEWKNVNEESQEKKITLSAERVLEIFKRISDEECLILGLDPRFSRPDWMI
LTVFPVPPLAVRPAVVMFGSARNQDDLTHKLADIIKANNQLNRNEQNGAAAHIILEDTKM
LQFHCATFVDNDMPGLPKAVQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFSGRTVITP
DPNLRIDQVGVPKSIAQNLTFPELVTPFNIDLMQQLVNRGANQYPGAKYIIRDNGERIDL
RYHPKASDLHLQIGYKVERHMQDNDVIVFNRQPTLHKMSMMCHKVKVLSWSTFRMNLSVT
SPYNADFDGDEMNLHLAQSLETKAEILNLAAVPRMIITPQSNRPVMGIVQDTLTAVRKMT
KRDVFLDRAEMMKLVMFLPIWDGRMPQPAILKPSPLWTGKQLFSLIIPGRVNCIRTHSTH
PDDEDSGPYKWISPGDTKVLIEDGELISGILCKKTLGTSSGSLAHIVFMELGFEIAGELY
GNIQTVINNWLLIEGHSIGIGDTIADPQTYIDIQDAIRKAKAEVIDVIEKAHNDDLEPSP
GNTLRQTFENQVNRILNDARDKTGGKAQKSLSEFNNFKAMVVAGSKGSKINISQVIACVG
QQNVEGKRIPFGFKYRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHGMGGREGLID
TAVKTAETGYIQRRLIKAMESVMVKYDGTVRNQVEHMAQLLYGEDGLDGVHVEFQNMTTL
KPSDAAFEKRFHFDPTNERSLRQSLAEVIVKDLVSDSASLAEIEREWEQLREDRNALRQI
FPTGDSKIVLPCNLERMIWNAQKIFRIDKRKQTDLSPVKVIEGVRDLCNRLNVVAGSDRL
SIQANANATILMKILIRSTLCCKRVSEEFRLSTEAFEWLIGEIEAKFQQAQVHPGEMVGA
LGAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEVINVSKKPKTPSLTVYLVGQAAR
DAEKAKDVLCRLEHTTLRKVTANTAIYYDSDPMNTVIAEDQEWVSVYYEMPDFDASRISG
WLLRIELDRKRMTDKKLTMEQISEKITAGFGDDLNCIFNDDNAEKLVLRIRIMNSDESKF
QEEEDVVDKMEDDVFLRCIEANLLSDMSLQGIEAICKVYMHLPSTDDKKRIQITEKGEFK
AIAEWILETDGTALNKVLSERDVDPVRTYSNDIVEVFGSLGIEAVRKAIEREMNHVISFD
GSYVNYRHLALLCDVMTAKGHLMAITRHGINRQETGALARCSFEETVDILMEAAVHSEFD
PMKGVSENIMLGQLAKIGTGCFELLLDAEKCKHGMEIPSNIDQGMGLGGAGTGIYFGGGI
GSPTAGMTPQMTPWNTGATPAYASVWSPGVGSGMTPGAAGFSPSAASESGYSPGYSPAWS
PQPGSPGSPSSPYIPSPHGGMSPSYSPTSPSYMPSSPAMTPQSPGYSPTSPSYSPSSPGY
SPTSPKYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSFSPTSPSYSPSSPNYTPSSPSYS
PTSPSFSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPSYSPSSPKYSPTSPSYSPASP
SYSPSSPQYTPTSPKYSPTSPSYSPSSPKYSPTSPSYTPTSPQYSPASPDYSPGSPQYSP
SSPQYSPASPTYSPSSPQYSPASPSYSPTSPRYTPTSPTYTPGSKYSPTSPTYTPTTPKY
SPTSPSYSPVDDDDSDKE
NT seq
5817 nt
NT seq
+upstream
nt +downstream
nt
atggcgtatacaggcgattctaatgctcctttgaagattgttaccaaagtacagtttggt
atattaggaccagatgaaataagacggatgtctgttacagaaggtggaatcaaatattca
gaaacaacagaaggtggtcgacctaaattatgtggattgatggacccaagacaaggtgtc
atagatcgacaatcaagatgtcagacctgtgccggaaacatgacagaatgtccaggccat
tttggccacatagaattagccaaacctgtgtaccatgtagctttcatgacaaaaattatg
aagatcctgagatgtgtttgtttttattgttcaaaaatattagcagacacatcaagtccc
aaaatcagagatattttgtcaaagtcaaaaggttatcctagaaagagattagctcatgtt
tatgatttatgtaaagtaagaaagatttgtgagggtggtgatgaaatggagaaagctggc
caagaggaagaaaatggagaacctaaaaagagtcatggtggttgtggtagatggcaacct
aagataaagaaagcagcactagatttaatagcagaatggaagaatgtaaatgaagaatcc
caagagaaaaaaattacattgtccgcagagcgagtactagaaatatttaaacgcatctcc
gatgaggagtgtctcatacttggtttagatcctcgcttttctagacctgactggatgata
ctgaccgtatttcctgtccctccattggccgtaagaccagctgttgtcatgtttggatca
gcaagaaatcaggatgatttgacccacaaactggcagatataatcaaagctaataatcaa
ctgaacagaaatgaacagaatggtgcagctgctcacattatattagaagatacaaagatg
ttacagtttcattgtgctacatttgttgataatgatatgccaggtttacccaaggctgtt
caaaaatcaggtcgtccacttaaatcaatcaaacagagattaaagggtaaagaaggtcgt
gttcgtggtaatttgatgggaaaacgtgttgatttctctggtagaactgtcatcacacct
gatcctaatttacgtattgatcaagtcggggtacctaaaagtattgcacagaatctcaca
ttcccagaactggttacacctttcaacattgatttaatgcagcagttggtaaatagagga
gccaatcaatatccaggtgctaagtatattatacgagataatggtgaaagaatagattta
cgatatcatcctaaagccagtgatcttcatttacagattggttataaggttgaaagacat
atgcaggataatgatgttattgtgttcaaccgacagccaacactacataaaatgtctatg
atgtgtcataaagttaaagttttgtcctggtctacgtttagaatgaacttgagtgtaaca
tctccatacaatgctgattttgatggtgatgaaatgaatctacatttagctcagtctttg
gaaactaaagctgagattttaaatctagctgctgtacctcggatgattattacaccccag
tctaacagaccagtcatgggtattgtacaagatacattgacagctgttagaaaaatgaca
aaaagagatgtatttttagacagggctgagatgatgaaactggtcatgtttttacctata
tgggatggaagaatgccacaacctgccattttaaaaccatcaccattatggacaggaaaa
caattgttctctctaattatacctggtcgtgtaaattgtatccgtacacacagtactcat
cctgatgatgaagatagtggaccgtataaatggatttcacctggagatacaaaggtatta
atagaagatggtgaacttataagtggtattttatgtaaaaagacactgggaacctcatct
ggttctttggctcatattgtatttatggaactgggttttgagattgctggagaactttat
ggtaatattcaaacagttattaataactggttactgatagaaggccatagtattggtatt
ggtgataccattgctgatccacagacctatattgatatccaggatgctattagaaaagct
aaggctgaggtgatagatgttattgagaaagctcataatgatgatttagaaccatctcct
ggtaatactctacgacaaacatttgaaaatcaagtcaacagaattctgaacgatgctcga
gacaagacaggaggaaaagctcagaagtccttgtctgaatttaacaacttcaaagctatg
gtagtagctggatccaaaggatctaaaattaatatctcacaggttattgcttgtgtaggt
caacagaacgttgagggtaaacgtataccatttggttttaaatatcgtaccttaccccat
ttcattaaagatgattatggtccagaatccagaggatttgtcgaaaattcctatctagcc
ggtttgacaccatctgagttcttctttcacggtatgggaggtagagaaggtctgattgat
acagctgtaaaaactgctgaaactggttatattcaaagacgtttgattaaagctatggaa
agtgtgatggttaaatacgatggtactgtacgtaatcaagtagaacacatggcacagtta
ttgtatggtgaagacggtctagatggtgttcatgtagaattccagaacatgactacactt
aaaccatcagatgctgcttttgaaaaaagatttcattttgatccaacaaatgaaagatct
ttacgtcaaagtttagcagaggtgattgttaaagatcttgtcagtgattcagcatcttta
gcagagatcgaaagagaatgggaacagctaagagaagatagaaatgccttacgacagatt
ttccctactggtgatagtaaaattgtcttgccatgtaatttagaaagaatgatctggaat
gctcaaaagatcttcagaattgataaaagaaaacaaactgatctatctcctgtcaaggtt
atagaaggtgtacgtgatttatgtaatagattaaatgttgtagctggtagcgatagattg
tcaatacaagccaatgccaatgctacaattctcatgaagattcttatcagatctaccctg
tgttgtaaacgtgtttctgaagaattcagattgtccactgaagcttttgagtggctaatt
ggtgaaattgaagctaaatttcagcaagcccaggtacatcctggtgagatggtgggtgct
ttaggagctcagtccctgggtgaacctgccacacagatgacattgaacactttccattat
gctggtgtgtctgctaaaaatgtaacccttggtgtacccagattgaaagaggtcatcaat
gtgtccaaaaagccaaagacaccatcacttacagtatatcttgttggtcaggcagctcga
gatgctgagaaagctaaggatgtattatgtcgtttggaacatacaacgttacgtaaagta
actgctaatactgctatatattatgactcagatcctatgaacacagttatagctgaagac
caggaatgggtcagtgtttattatgaaatgccagattttgatgcatcaagaatttcagga
tggttattacgtattgaattggacagaaaacgtatgacagataaaaaactgaccatggaa
cagatctcagaaaaaattacagctggttttggtgatgacttgaattgtatattcaatgat
gataatgctgaaaagttggtattgagaatacgaattatgaattcagatgaaagcaaattc
caagaggaagaagatgtagtagataagatggaagatgatgtatttttacgatgtattgaa
gctaatttattatcagacatgtctttacaaggaatagaagccatctgcaaggtttacatg
catctgccatcaactgatgataagaagagaatacagataacagagaaaggtgaatttaaa
gctatagctgaatggatattagaaactgatggtacagctttaaataaagtattaagtgaa
agagatgtcgatcctgttagaacctactctaatgatatcgtagaagtctttggatcctta
ggtatagaagctgtacgtaaagctattgaaagagaaatgaaccatgttatctcttttgat
ggttcttatgttaactaccgacatttggctttgttgtgtgatgttatgacggctaaaggt
catttaatggctatcactcgtcacggtattaacagacaggaaactggtgccttggctcga
tgttcttttgaagaaacggttgatattttgatggaagctgctgtacacagcgaatttgat
cctatgaaaggtgtatcagagaatattatgttgggtcagttagctaagattggtactggt
tgttttgaacttctattagatgctgagaaatgtaaacatggtatggagattccatcaaat
attgatcaaggcatgggattaggaggtgctggaacaggaatatattttggtggtggtatt
ggtagtcctacagctggtatgacaccacagatgactccatggaatacaggtgctacacca
gcttatgctagtgtttggtcaccaggtgttggtagtggtatgacaccaggtgcagcaggt
ttctcaccatcagctgctagtgaaagtggttacagtcctggttacagtccagcttggtca
ccacaacctggttctcctggatccccatccagtccttacattccaagtcctcatggaggt
atgtcaccaagctattcaccaacatctccatcctatatgccaagttctccagccatgaca
cctcagagtccaggatattcacctaccagcccgtcctactctccttcaagtcctggctac
tctcctacatctcccaaatacagtccaacatctccttcatattccccaacaagtccttct
tacagcccaacatctccatcttactcgccaacaagcccgtcttattcccccacaagtcca
tcatatagccctactagtccatcttattctccaacatctccctcctactctccaacaagt
ccttcatacagtccaacatctccctcttatagccctaccagtccttcctactcaccaact
agtccatcttattcccccactagcccatcgtactctcccactagcccttctttctctcct
accagtccaagttattctcccagttctccaaattataccccctcctcaccatcttattct
cctacaagtccaagtttcagtcctacaagtccttcctacagtcctactagcccgtcttat
agccctagttcacctagctactcaccatctagccccagttatagcccgagtagtccaagc
tactctcctagtagtcctaaatatagtcctactagtccctcatattcccctgcctctcca
tcttattctcccagctctccacagtataccccaacctcccccaaatattctccaacaagt
ccatcttattctcccagcagtccaaaatattctcccacatcgcccagttatacacccaca
tctccgcaatacagcccagcatcacccgattacagtcctggctcacctcaatacagtcca
agctctccgcagtattcaccagcctctcctacctactctccttcaagtccgcagtactcg
cctgcgagtccttcatatagcccaactagtcctagatacactccaaccagtcctacttat
actccaggctcaaaatattccccaaccagtccaacctatacaccaacaactcctaaatat
tctcctactagtccaagttattcccctgttgatgatgatgacagtgataaagaataa
DBGET
integrated database retrieval system
