Polynucleobacter yangtzensis: PKF023_09600
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Entry
PKF023_09600 CDS
T08788
Symbol
rimO
Name
(GenBank) ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
pyt
Polynucleobacter yangtzensis
Brite
KEGG Orthology (KO) [BR:
pyt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pyt03009
]
PKF023_09600 (rimO)
Enzymes [BR:
pyt01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
PKF023_09600 (rimO)
Ribosome biogenesis [BR:
pyt03009
]
Prokaryotic type
ribosomal protein modification factors
PKF023_09600 (rimO)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM_2
CLP1_P
Motif
Other DBs
NCBI-ProteinID:
BDT77157
UniProt:
A0A9C7CY87
LinkDB
All DBs
Position
952768..954126
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AA seq
452 aa
AA seq
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MAGKIGFVSLGCPKALVDSELILTQLSAEGYETAKDYSGADLVVVNTCGFIDSAVEESLS
AIGEALAENGKVIVTGCLGARKNADGSDLIQSIHPKVLAVTGPHATDEVMQAIHLHLPKP
HDPFIDLVPPAGVKLTPKHYAYLKISEGCNHRCTFCIIPNMRGDLVSRPIGEVLLEAKRL
FESGVKELLVVSQDTSAYGVDIQYRTGFWDGKPVKTKMFDLVNALNQIAREHQAWVRLHY
VYPYPHVDDVLPLMAEFSEHGYGVLPYLDIPLQHAHPDVLKRMKRPASGEKNIERIMSWR
KACPDLVIRSTFIAGFPGETEEEFEYLLNFLDEAQIDRAGCFAYSPVEGATANQLDNHVP
DEIREERRARFMAKAEEISIKRLAKKIGKRVQVIVDRVDESGGIGRTIGDAPEIDGLVRV
LPASKPSKRYRSGEIIRATVISSQGHDLIAET
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
gtggctggaaaaataggatttgtatccctaggttgtcctaaggcgctagttgattcagaa
ctcattctcacgcaactgagtgctgagggctacgagactgctaaagattattctggtgca
gatttggtggtggttaatacctgcggctttatagattccgcagttgaagaaagtctttct
gcaatcggtgaggctcttgctgaaaatggcaaggtgattgttactggttgcttgggtgcc
agaaagaatgcggatggctctgatcttattcagagtattcaccctaaagtccttgccgtt
acagggccgcacgctacagatgaagtaatgcaagctattcatttgcatcttcccaagcca
catgatccatttatagatttagttccgccggctggcgtaaagctgactcctaagcattac
gcttatctcaagattagcgaaggctgcaatcatcgctgtactttttgcatcatcccaaac
atgcgcggcgatttggtatcgcgtccaattggtgaagtattgcttgaggcaaagcgttta
tttgagtcgggggtaaaagaattattggttgtttctcaagacactagtgcttatggcgtt
gatattcagtaccgcactggtttctgggatggtaagcctgttaaaaccaaaatgtttgat
ttggtaaacgccttaaatcaaatcgcgcgtgaacatcaagcctgggtgagattgcactat
gtctatccttatccgcatgtagatgatgtgctgccactgatggcagagttctcagagcat
ggttacggtgttttgccttacttggatattccgttgcagcatgcgcatcccgacgtgctg
aaacgtatgaagcgtccagctagcggcgaaaaaaatatagaacgcatcatgtcttggcgt
aaagcttgtcctgatttggtcatcagaagtactttcattgcaggctttcctggtgagact
gaggaagagttcgagtatttactcaacttcttggatgaggcgcaaattgatagagccggt
tgctttgcttattcgccagtagagggcgctacagcaaaccagctagacaaccacgtaccg
gatgaaattcgtgaggaacgacgtgcccgctttatggcaaaagcagaagaaatctctata
aaacgacttgctaaaaaaataggcaagcgcgttcaggtcattgttgatcgcgtggatgaa
tcagggggaatcggcagaactattggcgatgcccctgaaattgatggtttggtgagggtt
ttgcctgccagtaagccctctaaacgctatcgttccggcgaaatcatccgtgcaacagtc
attagctcccaagggcatgacctaatagccgaaacttga
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