KEGG   Quercus lobata (valley oak): 115974848
Entry
115974848         CDS       T07350                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2-like
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
qlo  Quercus lobata (valley oak)
Pathway
qlo03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:qlo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    115974848
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:qlo03021]
    115974848
Enzymes [BR:qlo01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     115974848
Transcription machinery [BR:qlo03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     115974848
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5 DUF2002
Other DBs
NCBI-GeneID: 115974848
NCBI-ProteinID: XP_030951247
LinkDB
Position
2:complement(18896350..18908799)
AA seq 1193 aa
MGASSDAKEEIGMSSKGEAYSNGVEMDTDDDEFLELTSIHELGEKFLKIFCKKAAVSFFN
EYGLISHQINSYNDFIKNGIQKAFDSFGEIIVEPGFDPSKKGEGEWRYASVRFGKVTLDP
PIFWGGEGNVKEFNMLPRHARLQNMTYSARMKVNIDVQVYTQKLVRSDKFKTGKDQFVDR
EILSEENRDIFFGRIPVMVKSDLCYMKGAENADCDFDHGGYFLIKGAEKTFIAQEQTSMR
RLWVLNNQGWTVAYKSEVKKHRLIVKLVGVPKVEDIKGGEQVLTVYFLSTEIPIWILFFA
LGVSSDREVIDLIDYDSEDASILNILFASIHDANENYGGFRRGKAALNFVEKCVKDTKFP
PGEAIEECINMYLFPSLQSSKQKARLLGYMVKCLLQAYNGQRKSDNRDDFRNKRFDLAGE
LLERELKVHIAHARRRMQKALQRDLYGDRDIRQIEHYLDASIITNGLSRAFSTGAWSHPF
KRMERISGVVATLGRTNPLQTMAEMRRTRQQVQYTGKVGDARYPHPSHWGRVCFLSTPDG
ENCGLVKNMAITGLVSTNILEPITSKLFDCGLEELGDDAPLGKKYKVFLNGEWVGVCTDS
ISFVQELRYKRRRKKLPHQVEIKRDEQHEEIRIYSDAGRILRPLLVVENLGKIKGDKGEN
YTFQSLLDKGIIDLIGTEEEEDCCTAWGIKYLFMEKGGKSSDKYTHCELDMSFLLGLSCG
LVPFANHDHARRVLYQSQKHSSQAIGFSTTNPNIRVDTLSHQLHYPQRPLFRTMTSDCLG
KPGYPLGHHGMLPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNKASLERGMFRSEHIRSYK
AEVDNKDSLEKKRKPEDFVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGRCAESG
SDHSIKLKHTERGMVQKVLLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLE
SQENFPFTIQGIVPDVVINPHAFPSRQTPGQLLEAALGKGIACGGSMRYATPFSTVSVDA
ITEQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLTHMSEDKVKFRNTGPVHPL
TRQPVADRKRFGGIKFGEMERDCLIAHGASGNLHERLFTLSDSSQMHICQKCKNVANVIQ
RTVQGGRKIRGPYCRVCESVDDIVKVNVPYGAKLLCQELFSMGISLKFETRLC
NT seq 3582 nt   +upstreamnt  +downstreamnt
atgggggcgtcatcggatgccaaggaagaaataggcatgagtagtaagggtgaagcgtat
tcgaatggggtggagatggataccgatgatgatgagtttctcgagttgactagtatacat
gagttgggtgaaaagtttctgaaaattttttgtaagaaggcagcggtttcattcttcaat
gagtatggtttgataagtcaccaaatcaactcgtacaatgacttcatcaagaatggtatc
cagaaggcctttgactcttttggtgagatcatagttgagcctggatttgacccatcaaag
aagggggagggtgagtggcgctacgcttcagtaaggtttgggaaggtgacccttgatccg
ccaatcttttggggtggtgaaggaaatgtgaaggagtttaatatgcttcctaggcatgcc
cggcttcagaacatgacatactcagcaaggatgaaagtgaatatcgatgttcaggtgtat
acgcagaaactagtcagaagtgacaagtttaaaaccgggaaggatcaattcgttgatagg
gagatcctaagtgaagaaaacagggatatttttttcggaaggattcctgtgatggtgaag
tctgacctgtgctacatgaaaggagctgagaatgctgattgtgatttcgatcatggaggc
tactttttaatcaagggtgcagagaagacatttattgcacaagagcagactagtatgagg
aggctttgggttttgaacaatcaaggttggactgttgcatacaagtctgaagtgaagaag
cacaggttaattgtgaagctagtgggggttcctaaagttgaagatattaaaggaggagag
caagttcttactgtatatttcttgtcaacagaaatccctatatggatattgttttttgct
cttggggtatcatcagacagagaagtcatagatcttattgattatgacagtgaagatgcc
agcatattgaatattctatttgcctcaattcatgatgccaatgagaactatgggggcttc
cggagagggaaggcagctctaaattttgtagaaaaatgtgtaaaggacaccaaatttcct
cctggggaagctattgaagagtgcattaacatgtatctgtttcccagtctccaaagctct
aagcaaaaggctcgtcttcttgggtatatggtgaagtgcctcttacaggcttataatggc
caaagaaaatctgataacagggatgattttagaaacaaaaggtttgacttggctggtgag
ctgcttgagcgagagctgaaagtgcatattgcacatgcacggaggcgcatgcagaaggct
ctgcagagagacctttatggagatcgtgatatacgtcaaattgaacactacctggatgct
tccataatcaccaatggcctttcaagagccttctcaactggcgcatggtctcatcctttc
aagaggatggaaaggatttctggtgtggtggcaacgctagggcgaacaaacccattgcag
acgatggctgaaatgaggagaacacgccagcaggttcagtacacagggaaggttggagat
gccagatatccacatccttctcactgggggagggtatgttttctctctactccagatggt
gaaaattgtgggcttgtaaaaaatatggccatcaccggactagtaagcacaaacatattg
gagcctataacttccaaattgtttgattgtgggttggaggaattgggggatgatgctcca
ttgggtaaaaagtataaagtatttttgaatggggaatgggttggtgtctgtacagattcc
atttcatttgttcaagagcttagatataagcgacgcaggaagaaattgccacatcaggtg
gagattaaaagagatgaacaacatgaagaaatacgtatatattctgatgctggaaggatt
ttacgtccacttttagttgtagagaatttaggaaagattaaaggagataaaggtgaaaat
tacaccttccaatctcttttggacaagggaatcattgatttaatcggaactgaagaagaa
gaagattgttgcactgcatggggcattaaatatctgttcatggaaaaaggagggaagtca
tctgataaatatacccactgtgaacttgacatgtcgtttttattaggtttgagctgtgga
cttgtcccatttgcaaatcatgaccatgcaaggagggtcctttatcaatctcagaagcac
tcttcacaggctattggcttttcaacaacaaatcctaatattagagtggatactctgtct
caccaattacattatccgcaaaggccactttttcgtacgatgacttctgattgtcttgga
aaaccaggatatcctcttggtcatcatggaatgctgccaaagcctgaattctacaatggc
cagaatgctattgtagcagtcaatgttcacctagggtacaaccaagaggattccttggtg
atgaacaaggcttctttggagcgtggaatgtttcggtctgagcatatcagaagttataag
gctgaggttgacaacaaggactcgttagaaaaaaagcggaagcctgaggattttgtcaac
tttggaaagattcaaagtaagattggacgtgttgacagccttgatgatgacggtttccct
ttcattggtgcaaacctgcagagtggtgacattgtcatagggaggtgtgcagaatctggg
tctgatcacagtataaaactgaagcacactgaaaggggcatggttcagaaagttttgctg
tcttctaacgatgagggaaagaattttgctgtggtgtccctgagacaggttcgttctcca
tgtcttggagacaagttttcaagcatgcatggtcagaagggtgtcttgggttttttggaa
tctcaagagaacttccccttcacaatacaagggatagttccagatgttgtaataaatcca
catgcatttccttcacgacaaactccgggtcagctcctagaggctgctttagggaaggga
atagcctgtggtggttcaatgagatatgccacccctttctccacagtctctgttgatgcc
atcactgaacagcttcatagggctggattttcaagatggggaaatgagagagtatacaat
ggacgaactggtgaaatggttcgttccctcatatttatgggtccaacattttatcagcgt
ctgactcacatgtctgaggacaaagtaaaatttcgcaacacaggtccagtccatcctctt
acccgacagccagtggccgataggaagcggtttggtgggatcaagtttggtgagatggag
cgtgactgccttatagctcatggtgcctcaggaaacttgcatgaacgcctctttacgctc
agtgattcctcccagatgcacatttgccagaaatgcaaaaatgttgcaaatgtgatccaa
cggactgtgcaaggtggccggaagattaggggtccatattgccgggtttgtgagtcagta
gatgacattgttaaggttaatgtaccttatggggccaagttattgtgccaggagcttttc
agcatgggcataagtctgaagtttgaaacccggctctgttga

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