Quercus lobata (valley oak): 115976814
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Entry
115976814 CDS
T07350
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115976814
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115976814
Enzymes [BR:
qlo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
115976814
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
115976814
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
CbiA
SRPRB
AAA_22
Motif
Other DBs
NCBI-GeneID:
115976814
NCBI-ProteinID:
XP_030954164
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All DBs
Position
2:80558125..80564197
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AA seq
443 aa
AA seq
DB search
MAYSGGAMGAPMAAGPASSSTVRQFKLDKECELRIEVSDASPLRLRLLNGTAEIFGSELP
PEIWLTFPPRLKFGVFTWYGATIEMDGTTELVYTADETPMVSYVNVHAILEGRRNRAKAS
PSNDSDSSQGPRVIVVGPTDSGKSSLSKMLLSWAAKQGWKPTYVDLDIGQGSITIPGCIG
ATPIEMPIDPVEGIPLDMPLVYFFGQTTPSNNVDLYKVLVKELAKILERQFAGNAESRAA
GMVINTMGWIEGLGYELLLHAIDTFNANVVLVLGQEKLWSMLRDVMKNNKPNVDVVKLQK
SGGVVNRNAKFRQKARSYRIREYFYGLTNDLSPHSNTASFSDFFIYRIGGGPQAPRSALP
IGAEPAADPTRLVPVSINPDLLHVVLAVSFAKEPDEIISSNVAGFIYITDIDMQRKKIIY
LAPSAGDLPSKYLIVGNLTWLET
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atggcgtacagtggcggagccatgggtgcgccaatggcggcgggtccggcatcgtcgtcg
acggtgaggcaattcaaattggacaaagagtgcgaactgagaatcgaagtcagtgacgcc
tcgcctctccgtctccgcctcctcaacggcaccgccgagattttcggctccgagctccca
ccggaaatctggctcaccttccctcccagactcaaattcggcgtttttacttggtacgga
gccacgattgaaatggatggtactacagaacttgtttatactgcagatgagacgcccatg
gttagttatgtaaatgttcatgctattctggaagggcgaagaaatcgtgcaaaagcatcg
ccatctaatgactctgattcatctcagggtcctagggtgattgttgtgggacctacagat
tctggcaagagttccttatcaaagatgcttcttagttgggcagctaaacagggttggaaa
cctacttatgtggacttggatattggacaaggatctattacaattcctggatgcatagga
gccaccccaattgaaatgccaattgatccagtggaaggaattcctcttgatatgcccctt
gtctacttctttgggcagacaactcctagtaacaatgtagatttgtacaaagttcttgtt
aaggagcttgctaaaatactggagagacagtttgctggcaatgctgaatctcgagctgca
ggaatggtgatcaataccatgggatggatagaaggattaggctatgagttgcttctacat
gcaattgatacattcaatgccaatgttgtcttggtcttgggtcaggaaaaactttggagc
atgcttagagacgtcatgaagaacaacaagcctaatgttgatgttgtgaaacttcaaaag
tcaggtggtgttgttaacaggaatgccaagtttcgtcagaaggccaggagttataggata
agggaatacttttacggccttaccaatgatctctctccacattctaatactgcaagtttt
agtgacttttttatctatcgaattggaggtgggccacaggccccacgttcagcactgcca
attggggctgagccagctgcagacccgacaagattagtacctgtcagtatcaacccagat
ttgctccatgtagttcttgctgtctcgtttgccaaagaacctgatgaaataatttcaagt
aatgttgctggctttatctatatcacagacattgacatgcaaaggaagaaaattatatac
cttgcaccgtctgcaggagatcttccaagcaaatatttgatagtgggaaacctgacatgg
cttgaaacctga
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