Quercus lobata (valley oak): 115988825
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Entry
115988825 CDS
T07350
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
115988825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qlo03021
]
115988825
Enzymes [BR:
qlo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
115988825
Transcription machinery [BR:
qlo03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
115988825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF2635
S_100
Motif
Other DBs
NCBI-GeneID:
115988825
NCBI-ProteinID:
XP_030968305
LinkDB
All DBs
Position
5:21258152..21289017
Genome browser
AA seq
1708 aa
AA seq
DB search
MADNTEVPTECVKSVKFSFFSDEDVRKISVKKITKDQYLDVMGRPEPGGLYDPHLGPLEE
TVPCKTCGQYYSPCHGHFGHIDLVAPVYNPLLFNILYNILHRTCFFCHHFRATRKQVETC
VSQLELIAKGDIVGAKILEADMPSETLYSDDSDGSQYDDVGHSRQQGWTSLQFTEAMSVL
KKFLKPRSPACKNCEAKNPAISKPTFGWFHMRGKSSDARQNVIRGHNLEGSFTGRTNKKA
LPEVENSNDTTPWSDVVDSAETDTASDTSPRPQDSATRKHGGKGGEVPHQFVKQKDFFSG
PLLPSEVKDILKDLWENEVELCSFISHIQHQGLEMKVGEMKDDYSMFFLETILVPPIKFR
PPAKGGDSVMEHPQTVLLNKVLQSNIQLRFAHDDNLERSKIVSRWMDLQQSVNVLFDSKT
ATAQGQRGIASGICQLLEKKEGMFRQKMMGKRVNYSCRSVISPDPYLAVNEIGIPPNFAL
ELTYPERVTPWNLVKLRKAIINGPVIHPGATHYADKLGIKKLRKEHLKERISISRKLPSS
RGLLTQHGKGSDYEFEGKFVRRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMH
YANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVKPTSGEPIRALIQDHVVSA
VLLTKKDTFFSADEFNQLLYCAGLSAASPASFNGKFGQKVCILNSDCEMQPLPPAIWKPV
PLWTGKQVISALLNHITKGRPPFNVEKDAKLPHDFFKSNRNEKKLNKEEKSDKDASKEKK
RDIEKTSQGKKVDKDAPTRKEPDEDKLLIHKNDLVRGVIDKAQFAEYGLVHTVHELYGSN
TAGVLLSALSRLFTSFLQVHGFTCGVDDLLLMKEKDNEREEKLQDCAEVGEEVHLKFVND
KGSVKIDADVLQLNIEKKIRSNGESALTDLDRKMISKLNEEVSKDFFKELLSRGLLKPSG
KNCISLMTTSGAKGASVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFPPWDCAARAGGF
IIDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKICYDHTVRDA
DGSVIQFFYGEDGVDVHQTSFIAKFEALAANQEIFSKKFRQGLHKSNVYIKGLPSSLEKK
AKDFVHKFTLKEKNPDILKEKDFLKLMEHKYISSLAQPGEPVGVLAAQSVGEPSTQMTLN
TFHLAGRGEMNVTLGIPRLQEILMTAARDIKTPVMTCPFQVGRSKEDASCLADKLKKITV
ADIIKSMKVSVVPFAVHDHQICSIYKLEMMLYVPENYPKNTDISLEDWEETLEVVFVREL
EDAIQNHLLLLSKISGIKNFMPDSKSNTSNGTDDDDVSGNRSQHEEDADADEDADDGAVS
DDLGLDVQKRKQQSIDEMDYDDASEEDPNEGELSAGSESEIDQAENEIEVTKDDAIEPLD
ALDISYEQSGKSSKHKSKDKKNESKAKRKKRSRGKLVKKEYDRAYFVKAKGMHFEIHFRF
TNEPHILLAQIAQKTAKKVYIQSFGKIDGCTVVTCQEKQVIFYGKNPKARKDISPAEKEK
VPALQATGVDFGTFWQFQDVLDVRCVYSNSIDAMLNTYGVEAARATIIREIQHVFGSYGI
SVNMRHLTLIADYMTHSGGYRPMNRLGGIANSISPFCKMSFETASKFIVEAASHGETDEL
ESPSARVILGLPVKVGTGSFDVMQKLEI
NT seq
5127 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaacacagaggtaccgacggagtgcgtgaaatcggtgaagttcagtttcttc
agcgacgaagatgttcgaaaaatcagcgttaagaagattacaaaggatcagtatcttgat
gtcatgggcagacccgagcctggtggattgtatgatcctcatttgggccccctcgaagaa
accgtcccttgcaagacatgtgggcagtactatagtccttgccatggtcattttggtcat
attgacctcgttgctccggtttataatcccttgctattcaatattctgtacaatattctt
catagaacttgtttcttttgccaccattttcgggcaactagaaaacaggttgagacatgt
gtttctcagttagaactcattgcgaaaggtgatattgttggggccaaaatattagaagct
gacatgccaagtgaaaccttgtattcagatgacagtgatgggagtcaatatgatgatgtt
gggcattcaaggcagcaaggatggacctctcttcagtttactgaagcaatgtctgttttg
aaaaagtttttgaagccgaggtctccggcttgtaagaattgtgaagccaaaaatcctgca
atcagtaaacctacttttggatggtttcatatgagaggaaaatcaagtgatgctagacag
aatgttattcgagggcataatttggaagggtcattcactggtagaactaataaaaaagct
ttgcctgaggtggaaaatagcaatgatacgactccctggagtgatgttgttgattctgct
gaaacagatactgccagtgacacctctcctagaccacaagatagtgctacaagaaagcat
ggaggaaaaggaggggaagtgcctcatcagtttgttaagcagaaagattttttttcggga
cctctattaccatcggaggttaaggatattttgaaggatctctgggaaaatgaggttgaa
ctctgctcattcatcagtcatattcagcatcagggacttgaaatgaaagttggtgaaatg
aaagatgattactccatgttcttcttggagactattcttgtacctccaatcaaattccgc
cccccagccaagggaggtgattcagtaatggagcatccacaaactgtcttgttaaataag
gtgctacagtcaaatatacaattaagatttgctcatgatgacaacttagagcgctcaaag
atagtgagccggtggatggatctccaacaatcagtaaatgtgttgtttgatagcaaaact
gcaacagctcaaggtcaaagaggtatagcttcaggaatttgtcagttgctggaaaagaag
gaaggcatgttccgccagaaaatgatgggaaagagggtcaattattcttgccgctctgtc
atatccccagatccctatttagcagttaatgaaattggaatccctccaaattttgcatta
gaattaacctatcctgagagggtgactccttggaatcttgtcaagctgaggaaagctatc
atcaatggtcctgtaatacatcctggagctacacactatgctgataagctgggtattaag
aaactgcgaaaagaacatctaaaagaacgcatttcaatatcaaggaaattgccatcctca
cgaggtcttctcacacagcatggaaaaggaagtgattatgaatttgaaggaaaatttgta
cgtcgtcacttgcaagatggggatattgtgcttgtcaacagacagccaactctccacaag
cctagtataatggcacatgtagttcgtgtgttaaagggggagaaaacacttcgtatgcac
tatgcaaactgcagtacgtataatgctgattttgatggtgatgaaatgaatgttcatttc
ccacaagatgaaatttctcgtgctgaagcgtacaacattgtaaatgcaaataatcaatat
gtcaagcccacaagtggtgaacccatcagagccttgattcaggatcatgtagtaagtgct
gtacttcttacaaagaaggatactttttttagtgctgatgagttcaaccaacttctttat
tgtgccggcctctcagctgcaagtccagcttcttttaatggaaaatttggccagaaagtt
tgcatattaaactctgactgtgagatgcagccccttccgcctgcaatatggaaaccggtg
cctctttggacagggaaacaggtaatcagtgccttgctgaatcatattacaaagggtcgc
ccaccatttaatgttgaaaaagacgcgaaacttccacatgatttttttaagagtaataga
aatgaaaagaaattgaacaaagaagaaaagtctgataaagatgcatcaaaggaaaagaag
cgagatatagagaaaacaagtcaagggaaaaaggtagacaaagatgcaccaacgaggaag
gagcctgatgaagataagttgttgatacataagaatgatttggtgcgtggtgtgatcgac
aaggctcagtttgctgaatatggtttggttcatacagtgcacgaactctatggctcaaat
actgcaggtgtcctgctttctgcgttaagtcgcttatttacttcttttttgcaggtgcat
gggttcacatgtggagtagatgatcttttgttaatgaaagagaaagacaatgagagggaa
gaaaaacttcaagattgtgcggaagttggagaagaagttcatcttaagtttgttaatgac
aagggtagtgttaaaatagatgcagatgttctgcaactgaatattgaaaaaaaaatacgc
agtaacggagaatctgccttaacagacttggatcggaagatgataagtaaactgaatgaa
gaagtaagcaaggactttttcaaagagctgttgtccagagggttattgaaaccctctgga
aagaactgtatttctctcatgactacatcaggggctaagggtgcttcggttaatttccaa
caaatatcttctcatttaggccaacaagagctagaaggaaaacgagtccctcgaatggtt
tctggaaagaccttaccctgctttcctccatgggattgtgcagctcgagctggaggcttt
attattgatcggtttcttactggattgcatcctcaagaatactacttccattgcatggct
ggtcgtgaagggttggttgatacagcagtgaagacatctcgcagtggatacctccaaaga
tgcctaataaaaaatcttgagtgcctaaaaatatgttatgatcatactgttcgtgatgct
gatggttccgttattcaatttttctatggagaagatggtgtagatgtccatcaaacaagt
ttcattgctaaatttgaagcactagcagctaatcaagaaattttttccaaaaaatttcgt
caagggcttcacaagtccaatgtttatattaagggattgccttcttctcttgaaaaaaaa
gcgaaggactttgtgcataagtttaccttgaaggagaaaaatcctgatattttaaaagaa
aaggattttttgaagttaatggaacacaaatacatctcaagtcttgcacagcctggagaa
ccagttggtgtgcttgcagcgcagtctgtaggagagccatcaactcagatgacgctgaat
acgttccatcttgctgggagaggtgaaatgaatgtgacacttggaattccgcgtttgcag
gaaattttgatgactgctgcaagagatattaagacacccgtgatgacatgccctttccaa
gttgggaggtcaaaggaagatgcctcttgtcttgctgataagttgaagaagataactgta
gcagacataataaagagtatgaaagtatcagttgtgccatttgctgttcatgatcaccag
atttgcagtatttacaagcttgagatgatgctttacgtacctgaaaactatccaaaaaac
actgatatttcattagaagattgggaggaaactctagaggttgtttttgtgagggaattg
gaggatgccatacaaaatcatctgctcttgctttctaaaattagtggcatcaaaaatttc
atgccagattcaaaatcaaatacatcaaatgggacagatgatgatgatgtatctggcaac
agatcacagcatgaggaagatgctgatgctgatgaagatgctgatgatggtgcagtgtct
gatgatctgggtttggatgtacaaaagagaaaacagcaatcaatagatgagatggattat
gatgatgcttctgaagaggatccaaatgaaggggagctatcagctggctctgaaagtgaa
attgatcaggctgagaatgaaattgaagttactaaggatgatgcgattgagccacttgat
gccctagatatatcatatgaacaatcaggaaaatcctctaagcataaatcaaaggacaaa
aagaatgaatcaaaagccaaaagaaagaagagatccaggggaaaactagtgaaaaaggag
tatgatagagcatattttgtgaaagctaagggaatgcactttgagatccattttcgattt
actaatgaacctcatattttactggctcagattgctcaaaaaacagccaagaaggtttac
atccagagctttggcaaaattgacgggtgtacagttgttacatgccaagaaaagcaagtg
atattctatggtaaaaatcccaaagccaggaaggatatctcgcctgcagaaaaggaaaaa
gttccagcactgcaagccactggagtggatttcggtacattttggcagtttcaggatgtt
cttgatgtcaggtgcgtatattccaacagcattgatgctatgctaaacacatatggtgtg
gaagctgccagagcaactatcatcagggaaatacaacatgttttcggttcttatgggata
tctgtcaatatgcggcacctaacacttattgctgactatatgactcattcgggagggtat
cgtccaatgaacagacttgggggaatagctaactcgatatctcctttttgtaaaatgtct
tttgagacagcttctaaatttattgttgaagctgcaagtcatggggagacagacgagttg
gagtctccatctgctagggttattcttgggttgccggtgaaggtaggtactggaagtttt
gatgttatgcagaagttggaaatctga
DBGET
integrated database retrieval system
