Quercus lobata (valley oak): 115994475
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Entry
115994475 CDS
T07350
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03020
RNA polymerase
qlo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
115994475
09124 Replication and repair
03420 Nucleotide excision repair
115994475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qlo03021
]
115994475
03400 DNA repair and recombination proteins [BR:
qlo03400
]
115994475
Enzymes [BR:
qlo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
115994475
Transcription machinery [BR:
qlo03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
115994475
DNA repair and recombination proteins [BR:
qlo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
115994475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
MIF4G_like_2
Lhr_WH
TACC_C
Motif
Other DBs
NCBI-GeneID:
115994475
NCBI-ProteinID:
XP_030974504
LinkDB
All DBs
Position
6:52086028..52096600
Genome browser
AA seq
1854 aa
AA seq
DB search
MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQVEHSETMERGKPKVGGLSDPRLGTI
DRKLKCETCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRSVCFNCSKILADEEDHK
FKQALKIKNPKNRLKKILDACKNKTKCEGGDELEVQDQDSEQPAKKSRGGCGAQQPKLTI
EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLTAERVLSILKRISDEDCQLLGLNPKYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
LLGCRKITKRDTLIPKDVFMNILMWWEDFDGKIPAPAILKPGPYWTGKQVFNLIIPKQIN
LIRTSAWHSEAETGSITPGDTQVRIERGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAA
RKFLGHVQWLVNYWLLQNGFSIGIGDTIADASTMESINETISKAKNEVKDLIRKAQAKEL
EPEPGRTMMESFENKVNQTLNKARDDAGSSAQKSLDESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK
LESLKMKKSEFNKTFRYEFDDEHWNPDYMMQEHIEDLKTIREFRNVFDAEVQKLEADRFQ
LGTEIATTGDNTWPLPVNLKRLIWNAQKIFKIDNRRHSDMHPMEIVEAVDKLQERLKVVP
GEDLLSVEAQKNATLFFNILLRSTFASKRVLEEYKLTREAFEWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
PEVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIDEDVDFVRSYYEMPDEEV
APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQCKINRFEDNDGFKP
EQEWMLDTEGVNLLAVMCHDDVDPRRTTSNHLIEIIEVLGIEAVRRSLLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETDH
LRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMDGLDFGMTPSRSPVSGTP
YHDNLMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPTYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN
PQSAKYSPSLAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYN
SGVSPDYSPSSPQYSPSAGYSPSQPGYSPSSTSQYTPQTSNKDDMSDKDDRSTR
NT seq
5565 nt
NT seq
+upstream
nt +downstream
nt
atggatatgcgatttccttactctccggcggaggtcgccaaagtccgcatggttcagttc
ggcatactcagccccgacgagatcaggcaaatgtcagtggtgcaggttgagcacagcgag
acgatggagaggggaaagccgaaggtgggcggtttaagcgaccctcggctcggtacaatt
gatagaaagttgaagtgtgagacttgcacagcgaacatggcagagtgtcctggacacttt
gggcaccttgagcttgctaagcctatgttccatattgggtttttgaagactgtgctcagt
atcatgcgctctgtttgcttcaattgctcgaaaattctggctgatgaggaagaccacaag
tttaagcaagcattgaaaataaagaatcctaaaaatagacttaaaaagattttggatgcc
tgcaagaataaaacgaaatgtgaaggtggtgatgaacttgaggttcaggatcaagattct
gaacaaccagcaaagaagagtcgtggtggctgtggtgctcagcagccaaagctcactata
gaaggtatgaaaatgattgcagagtacaaggctcagaggaagaaaagtgatgatcaagaa
cagcttccagagcctgtggaaagaaaacagacacttactgcagaaagggttcttagtatt
ctaaagaggataagtgatgaagactgccaattgttaggcttgaaccctaagtatgcccgt
ccggactggatgattctacaagtccttccaattcctccacctcctgttagaccctctgtg
atgatggatacctcctccaggagtgaggacgatttgactcatcaattggcaatgattata
aggcacaatgagaatctgaggaaacaagagaggaatggggcacctgcacatatcatttca
gaatttgcacagttgttgcaattccacatagccacatattttgacaatgagttgccagga
cagccaagggcaacccagagatcagggagaccaattaaatctatctgtagtaggcttaaa
gcaaaggaaggtcgaatcagaggtaacttgatggggaaacgtgtggatttttcagcacga
actgttattactcctgatccaaacattaatattgacgaattgggggtcccatggagtatt
gctttaaatctcacatatccagagactgttactccatataacattgaaaggttgaaggag
cttgttgaatatgggccacatcctccacctggtaaaactggtgccaagtatatcattagg
gatgatggtcaaaggctagatctccgttacttgaagaaaagtagtgatcaccatctagag
cttggatataaggtggagcggcatttgaatgatggagattttgtactctttaatcgtcaa
cctagtctccataaaatgtctattatggggcacagaatcaagattatgccatactcaact
tttcgtctgaatttgtctgttacctcaccatacaatgctgattttgatggtgatgaaatg
aatatgcatgttcctcaatcatttgaaactagagcagaggttttggagctaatgatggtg
cctaaatgcattgtctctcctcagtcgaatagacctgttatgggaatagtccaggatacg
cttttaggatgccgtaaaatcaccaagagggacacacttattccgaaggatgttttcatg
aacatcttgatgtggtgggaagattttgatgggaaaattcctgctcctgcaattttgaag
ccagggccttattggactggaaaacaagttttcaatcttattataccaaaacaaataaat
ctcatacgaacttctgcctggcactcagaggcagaaactggatccattactccaggggac
actcaagtaagaatagaaaggggggagctacttgctggaactctttgcaagaagacactt
ggaacatctactggaagtctgatacatgttatttgggaagaggttggccctgatgcggct
cgtaagtttttgggtcacgtgcagtggcttgttaattactggcttttgcagaatggtttt
agcattgggattggagataccattgctgatgcatccacaatggaatcaattaatgaaact
atttctaaagcaaaaaatgaagtgaaagaccttattcggaaagcccaagcaaaggagcta
gaacctgaacctggacgtactatgatggagtcatttgaaaacaaagtgaaccagactttg
aataaggcccgtgatgatgccggaagtagtgcccaaaagagtttagatgagagtaataat
ctcaaggctatggttactgcaggatccaaaggtagtttcatcaacatatcacagatgact
gcttgtgtggggcagcagaatgtggagggtaagcgaatcccatatgggttcatagaccgg
acattgccccatttcactaaagacgattatgggccagaaagtcgtgggtttgtggagaac
tcgtacctgcgtggactgactccacaggagttcttttttcacgccatgggtggtagggaa
ggtcttattgatactgcggtgaagacctctgaaactggttacattcaaaggcgacttgtg
aaggctatggaagatattatggtcaaatatgatgggactgtacggaactctttgggtgat
gttatccagtttctatatggggaagatggtatggattctgtctggatagaatcgcagaag
ctggaatctttgaaaatgaaaaaatcagaatttaataagacgttcaggtatgagtttgat
gatgaacattggaacccagattacatgatgcaagaacacattgaagacttgaaaaccata
agagagttccgcaacgtgtttgatgctgaagttcaaaaacttgaagctgatagattccaa
cttggaacagagattgccactacaggtgataatacttggccattgcctgtcaaccttaaa
aggcttatatggaatgcgcagaagatctttaagattgacaatcgaaggcattctgatatg
cacccaatggaaattgtggaagctgttgataagctccaggagaggctgaaggttgtaccg
ggtgaggatttgttgagtgttgaagctcaaaagaatgctactctcttctttaatattttg
ctacgtagtacttttgccagtaagagggtgttggaggagtacaaacttactcgcgaggca
tttgagtgggttattggtgaaatagaatcgcgtttcctacagtcacttgtagcacctggg
gaaatgattggttgtgttgctgcacaatctattggtgagcctgctacacagatgactctg
aataccttccattatgctggtgttagtgcaaagaatgtcactcttggtgttcctaggttg
agggaaatcattaatgttgctaagaggatcaaaacaccttctctctctgtctacttgaag
cctgaagttagtaaaactaaggagagagcaaagaatgttcaatgtgctttggaatacact
actctccggagtgtaactcaagctacagaagtatggtatgatccagatcccatgagcaca
attattgatgaggatgttgattttgtcagatcctattatgaaatgccagatgaagaagtt
gcccctgaaaaaatctctccttggttgcttcgtatagagttgaatcgtgaaatgatggtg
gataagaagttaagcatggctgacattgctgagaagatcaaccttgaattcgatgatgat
ttgacttgtatattcaatgatgacaatgctgaaaaactgatccttcgtatccgtatcatg
aatgatgaagctccgaagggtgaactgaatgatgaatctgctgaagatgatgttttcctc
aagaagatcgagagtaacatgttgacagaaatggctcttcgaggtatcccagatatcaac
aaggtatttattaaacaatgtaagataaaccggttcgaagataatgatggatttaagcca
gagcaagagtggatgttggatacagaaggtgttaatctattggcagttatgtgccatgat
gatgttgatccaaggaggaccacaagcaatcacttgatagaaattattgaggttcttgga
attgaggcagttcgaaggtccttgttggatgaattgagggttgttatatcttttgatgga
tcttatgtgaattatcgccatctggctatcctgtgtgatacaatgacctatcgtggccat
ttaatggcaatcactcgccatggtatcaaccgaaatgatacagggccgatgatgagatgc
tcatttgaagagacggtggacattcttcttgatgctgcggtgtttgctgaaacagatcat
ttgaggggtgttactgaaaatataatgttaggccagcttgcacccattggcactggagac
tgtgctttgtatctcaatgatgagatgttgaagaatgctattgagctccagctacctagt
tatatggatggtctggattttggcatgacaccttcccgctctcctgtctcaggaactcca
tatcatgataacttgatgtctccaagttatttgctgagcccaaatctccgcctgtctcca
atttcagatgctcagttttctccttatgttggtggaatggcattttctcctacttcatct
ccagggtacagcccatcatctccgggctatagtccatcatccccaggatatagtcctaca
tccccaggatacagtcctacctcccctggatatagtcccacgtctcctggatacagccct
acttcccctacttatagccctagctctcctggttatagcccaaccagtcctgcctattct
cctacaagcccatcttactcgcccacctctccaagctatagccccacatctccaagctat
agtcctacctctccaagctacagtcccacatctcccacttacagcccaacttcaccaagc
tatagccccacatcaccagcatacagccccacatcgcctgcatacagtcccacttcacct
gcgtacagccctacgtcaccatcctacagccccacctcgccatcctatagcccaacttct
ccttcttatagcccgacctcaccttcctacagccctacatccccgtcatacagccccaca
tccccatcgtacagccctacctcaccagcctatagccccacttctcctggctatagccca
acatcaccaagttacagcccaacctcgccaagctatagccctacatctccaagttacaat
cctcagtcagcaaaatacagcccatcactggcatactcaccaagcagtccaagattgtca
ccgtccagtccatatagtcctacatctccaaattacagcccaacatccccatcatattca
ccaacatccccatcatattctccatcaagcccaacatacagtcccagcagtccatacaat
tctggagtgagcccagattacagcccaagttctccacaatacagtccaagtgcagggtac
tctcccagtcaacctggatactctccgtcatctaccagccaatatactccacaaacgagt
aacaaagatgacatgagtgacaaagatgacaggagcactcgttaa
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integrated database retrieval system
