Quillaja saponaria (soapbark tree): O6P43_024914
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Entry
O6P43_024914 CDS
T09778
Name
(GenBank) DNA-directed RNA polymerase subunit
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
qsa
Quillaja saponaria (soapbark tree)
Pathway
qsa03020
RNA polymerase
qsa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
qsa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
O6P43_024914
09124 Replication and repair
03420 Nucleotide excision repair
O6P43_024914
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qsa03021
]
O6P43_024914
03400 DNA repair and recombination proteins [BR:
qsa03400
]
O6P43_024914
Enzymes [BR:
qsa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
O6P43_024914
Transcription machinery [BR:
qsa03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
O6P43_024914
DNA repair and recombination proteins [BR:
qsa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
O6P43_024914
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
Motif
Other DBs
NCBI-ProteinID:
KAJ7953177
UniProt:
A0AAD7L8N4
LinkDB
All DBs
Position
10
Genome browser
AA seq
1841 aa
AA seq
DB search
MDIRFPYSPAEVSKVRMVQFGILSPDEIRQMSNLEIEYGETTEHGKPKPKGLSDPRLGTI
DRKMKCETCMGNMAECPGHFGYLELAKPMFHIGFMKTVLAILRCVCFNCSKIRADEDDHK
FKQALRIRNPKNRLKKILEACKNKTKCEGGDEIDVQGEDTEEPVKKKRGGCGAQQPNLTI
DGMKIIAEYRLPKKKTDDQEQLPEPVERKQTLTAERVLSILKRISDEDCQLLGLNPKYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKKQERNGSPAHIIS
EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT
LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPTILKPEPLWTGKQVFNLIIPKQIN
LIRYSSWHSETESGSITPGDTVVRIEKGEVLTGTLCKRTLGASAGSLVHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNEVKGLIRSAQEKKL
EPEPGRTMMDSFENKVNQVLNKARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
LDSLKMKKTEFDRVFRYEFDDENWKPNYMLEEPIDDLKTIREFRNVFEAEVQKLDADRYQ
LATEIATTGDNSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLRVVP
GEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVRSYYEMPDEEV
SPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNVKIQKFDEKEGFKP
HDEWMLDTEGVNLLAVMCHEDVDAMRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY
LRGVTENIMLGQLAPIGTGDCGLLLNEEMLKNAIELQLPSYMDGLDFGMTPARSPVSGTP
YHEGLMSPNYLLSPNLRLSPITDAQFSPYVSGMPFSPTSSPGYSPSSPNYSPSSPGYSPT
SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYS
PSLAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDY
SPSSPQFSPSAGYSPSQPGYSPSSTSQYTPQTSDKDDRSTR
NT seq
5526 nt
NT seq
+upstream
nt +downstream
nt
atggatatccgatttccttattcgccggcggaggtgtccaaagtccgcatggttcagttc
ggcatactgagtcccgacgagattaggcaaatgtctaatttagagattgaatatggtgag
acaacagagcatggaaagccgaagccaaaaggattaagtgatcctaggcttggtactatt
gatagaaagatgaagtgtgaaacttgcatgggaaacatggcagagtgtcccggtcatttt
gggtatctggagcttgccaaacccatgttccatattgggtttatgaagaccgtgcttgct
atattgcgttgtgtttgcttcaactgctcgaaaattcgagcagatgaggatgaccataag
tttaagcaagctttgaggataaggaatcccaaaaacaggctgaaaaagattttggaagcc
tgtaagaacaaaaccaaatgtgaaggtggtgatgagattgacgtccaaggtgaagacact
gaagaaccagttaagaagaagcgtggtggctgtggtgctcagcagccaaacttaactatt
gatggtatgaaaatcattgctgagtacaggttgccaaagaagaaaactgatgaccaggaa
cagcttcctgaacccgtggaaagaaaacagacacttactgcagaaagggttcttagtatt
ttgaaacggataagcgacgaggactgccaattgttaggcttgaatcctaagtatgcccgt
ccagattggatgattcttcaagtgcttccaatcccccctcctcctgtgagaccttctgta
atgatggatacatcctctaggagtgaggatgatttaacgcatcagttggctatgattatt
aggcacaatgagaatctaaagaaacaggagaggaatggatcacctgcgcatattatttca
gagtttgctcagttgttgcaattccatatagccacatattttgacaatgagttgccagga
ctgccaagggctacacagagatcaggaaggcctatcaaatcaatatgtagtaggcttaag
gcaaaagaaggccggattaggggtaacttgatgggaaagcgagtagatttttcagcgcgt
acagttattactccagatccaactatcaacattgatgaattgggagtaccctggagtatt
gctttaaatctgacataccccgagacggtgactccatataacatcgagaggttgaaggag
cttgtagagtatggaccccatccccccccgggtaaaactggtgccaagtatatcatacgg
gatgatggacaaaggcttgaccttcggtacttgaagaaaagtagtgatcatcatttggag
cttggatacaaggttgagcggcatttgaatgatggtgattttgtcctcttcaatcgtcaa
ccaagtctccataaaatgtctatcatggggcacagaatcaagattatgccctattctact
ttccgcctgaatttgtcggttacttctccgtataatgctgattttgatggggatgaaatg
aatatgcatgttcctcagtcatttgaaactagagcagaggtattggagttaatgatggtg
cccaaatgcattgtgtccccccaggcaaatcggccagtaatgggaattgtccaggatacg
cttttaggttgccgtaaaatcaccaagagggatacctttataacaaaggatgtttttatg
aacatcttgatgtggtgggaggattttgacgggaaagtccctgccccaacaatattgaag
ccggaacccctttggactggaaaacaagttttcaatcttataataccaaaacaaattaat
cttattagatattctagctggcactctgagactgaaagtggatccataactccgggagat
actgttgtcagaatagaaaagggggaggtgctcactggaaccctctgcaaaaggacactt
ggtgcatctgctgggagtcttgtacatgtcatttgggaagaggttggacctgatgcagct
cgtaaatttcttggtcacacacagtggcttgtgaattactggcttctgcaaaatgctttc
agcattgggattggagatactattgctgatgcagcaacaatggagaaaattaatgaaact
atttcgaaagcaaaaaatgaagttaagggcctcatcaggagtgcacaagaaaagaagtta
gaacctgaacctggacggactatgatggattcatttgaaaacaaagttaaccaggtgcta
aataaagctcgtgatgaagctggaagtagtgctcagaagagtttatctgagagcaataat
cttaaagcaatggttactgcaggatctaaaggaagttttatcaacatatctcagatgact
gcttgtgtgggacaacagaatgttgagggtaagagaattccgtatgggttcatagatcgg
acgttgccccacttcacaaaagatgattatgggcctgaaagtcgtggctttgtggaaaac
tcgtacctgcgtggattgacaccacaagagttctttttccatgccatgggtggtagagaa
ggtctaatagatactgcagtgaagacctcagaaactgggtatatccagaggcggcttgtg
aaggctatggaggatattatggtcaagtatgatgggacagtgaggaactcgttgggagat
gtaattcagtttctatacggagaagatggtatggatgctgtttggattgaatcccaaaag
ctggattctttgaaaatgaaaaaaacagaatttgatagggttttcaggtacgagtttgat
gatgaaaactggaaaccgaattacatgctcgaagaacctattgatgatctgaaaaccatt
agggagttccgtaatgtgtttgaggccgaagttcaaaagcttgatgcagacagataccaa
cttgctacggaaattgctactactggtgacaattccttgccactgcctgttaatctgaag
aggctcatctggaatgctcagaagaccttcaaggttgacttccgaagaccttctgatatg
catccaatggaaattgtcgaagctattgataagctgcaagagagactgagggttgttcca
ggcgaagatttgctgagccaagaagctcagaaaaatgctactctcttgttcaatattctg
cttcgtagcacttttgccagtaaaagggtgctggaagaatacaggctttctcgtgaagca
tttgagtgggttgttggtgaaatagagtcaaggttcctacagtcactcgtagctccaggg
gaaatgattggttgtgttgcagcccaatctattggtgagcctgcaactcagatgactcta
aacacctttcactatgctggtgtgagtgcaaagaatgtcactctcggtgttcccaggttg
agggaaatcatcaatgtggccaagagaatcaaaacgccttctctctctgtctacttgaag
cctgaagtcaataaaactaaagagagggccaaaaatgtgcaatgtgctttggagtacacc
actcttcgcagtgttactcaagcaacagaagtctggtatgatccagacccaatgagcaca
ataatagaagaggatgttgattttgtcaggtcttattatgaaatgccagatgaagaggtc
tcccctgataaaatctctccttggctgcttcgtatcgagttaaaccgtgaaatgatggta
gataagaagttaagcatggctgacattgctgagaagattaaccttgaatttgatgatgat
ttaacttgtatttttaatgatgacaatgctgaaaagctgatacttcgtatccgtattatg
aatgatgaagctcccaagggtgagttgcaggatgaatctgctgaagatgatgttttccta
aagaagatagaaagcaacatgttgacagaaatggctctaagaggtatcccagacatcaac
aaagtgttcataaaaaatgttaaaattcagaagtttgatgagaaggaaggctttaagcca
catgatgagtggatgcttgatactgaaggtgtcaatcttctagccgttatgtgtcatgaa
gatgttgatgctatgaggaccacaagcaaccacttgattgaagttattgaagttcttggg
attgaggcagtacggaggtccctgctagatgaattgcgtgttgttatatcttttgatggt
tcttatgtgaactatagacatcttgctattctttgtgatacaatgacctaccgaggccac
ttgatggcaatcactcgtcatgggatcaatcgaaatgatactgggcctatgatgcgatgt
tcatttgaagagacagttgacattcttctggatgctgcagtatatgctgaaacagattat
ttgaggggtgtaacggaaaatatcatgttgggtcagcttgcccctattggaactggtgac
tgtggcctgttactcaatgaggagatgctaaaaaatgcaatcgaacttcagctacctagt
tatatggatggtctggattttggcatgacacctgcacgttctccagtctcgggtacccca
taccacgaaggattgatgtctccaaattatctgctgagtccaaatctccgcctatcacct
attacggatgctcaattttctccttatgttagtggaatgcccttctctccaacatcttcc
cctggctacagcccatcatctccaaactatagcccctcatcacctgggtacagccccaca
tctcctgggtacagccccacgtcacctgggtacagccctacctcaccggggtacagcccc
acctctccaacttatagccctagttctccgggatatagtccaactagtccagcatattca
cctacaagtccatcttattcgcctacttcacccagctacagccccacatctccaagttac
agccccacttcaccaagctacagtcccacttcaccgagctacagtcccacttcaccaagc
tacagcccaacttcacctgcgtacagccctacttcacctgcatacagccccacgtcacct
gcatatagtcctacatcaccttcatacagccctacatcaccttcatacagcccaacatca
ccttcatacagcccaacatcaccctcatacagcccaacatctccatcgtacagccctact
tcaccagcatacagccccacttcacctggttacagcccaacctcacctagctacagccca
acctcaccaagctacagccctacatctcccagttacaatccccagtcagcaaaatacagc
ccgtccctggcttactcaccgagcagtccaagattatctccatcgagtccatatagtcca
acatctcctaattacagcccaacatctccatcatactcaccaacatctccatcatattct
ccatcaagcccaacttacagtcccagcagcccatataactctggtgtaagtccggactac
agcccaagttctccacagttcagtcccagtgcgggttactcaccaagtcaacctggttac
tcaccatcatcaaccagccagtacactccacagacaagtgacaaggatgataggagtact
cgttaa
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integrated database retrieval system
