Quillaja saponaria (soapbark tree): O6P43_033562
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Entry
O6P43_033562 CDS
T09778
Name
(GenBank) DNA-directed RNA polymerase subunit
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
qsa
Quillaja saponaria (soapbark tree)
Pathway
qsa03020
RNA polymerase
qsa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
qsa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
O6P43_033562
09124 Replication and repair
03420 Nucleotide excision repair
O6P43_033562
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qsa03021
]
O6P43_033562
03400 DNA repair and recombination proteins [BR:
qsa03400
]
O6P43_033562
Enzymes [BR:
qsa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
O6P43_033562
Transcription machinery [BR:
qsa03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
O6P43_033562
DNA repair and recombination proteins [BR:
qsa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
O6P43_033562
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-ProteinID:
KAJ7944104
UniProt:
A0AAD7KQY8
LinkDB
All DBs
Position
14
Genome browser
AA seq
1734 aa
AA seq
DB search
MDIRFPYSPAEVAKVRMVQFGILSPDEIRQMSAVEISTAETTKNGKPKPKGLSDPKLGTT
DKTMKCETCMGNMADCPGHFGYLELAKPMFHIGFMKTVLTILRCVCFNCSKILADEEDLK
FKQALRIKNPKNRLKKILDACQNKTKCEGGDEIDVPGENFEESVKKRHGGCGAWLPNLKI
DGMKIIAYYRKKNNDDEEQLPEPMERKQTLTAERVLSILKRISDEDCQLLGLNPKYARPD
WMILQVLPIPPPSVRPSVMMYKSSQSEDDLTHQLAMIIKHNENLKKQERNGSPAHIISEF
AQLLQFHIVTYFNNELPGLPRVQQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTV
ITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDD
GQRLDLRYSNKSSNHHLELGYKVERHLKDGDFVLFNRQPSLHKMSIMGHKIKIMPYSTFR
LNLSVTSPYNADFDGDEMNMHVPQSLETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLL
GCRKITKRDTFITKDDFMNILMWWEDFDWEIPAPTILKPEPLWTGKQVFNLIIPKRINLI
RYSSWHSETENGSITPGDTVVRIEKGELLTGALCKKTLGASAGSLVHVIWEEVGPDAARK
FLGQTQWLVNYWLLQNAFSIGESEPGRTMMDSFENKVNQVLNKARDEAGSSAQKSLSESN
NLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVE
NSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSMG
DVIQFLYGEDGMDAVWIESQKLDSLKMNKSEFDRVFRHGFDDENWKPTYMLEQHIDDMKI
ISEFRNVFEAEVQKIDADRHQLATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSD
MHPMEIVEAIDKLQERLKVVPGEDLLSQEAQKNATLLFNILLRSTFSSKRVMEEYRLSSE
AFDWVVGEIETRFLQSLVGPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPR
LKEIINVAKRIKTPSLSVCLKPEVNKTKERAKNVQCALEYTTLRTVTQATEVWYDPDPMS
TIIEEDVDFVKSYYEMPDEEVSPEKISPWLLRIELNCEMMVDKKLSMADIAEKINLEFDD
DLTCIFNDDNAENLILRIRIMNDEAPKGDSAEDDVFLKKIESNMLTEMALRGIPEINKVF
IKNVKIQKFDKDDGFRPHDEWMLETEGVNLLAVMCHEDVDATRTTSNHLIEVIEVFGIEA
VRKALLDELRAVISFDGSYVNYRHLAILCDAMTYRGHLMAITRHGINRNDNGPMMRCSFE
ESVDILMGAAVYAETDYLKGVTENIMLGQLAPIGTGDCGLLLNEEMLKDVVELQLPSYMD
GLNNFGMTPACSPVSATPYRGGLMSPNYLSSPDLRLSPSTDAQFSPYVRGMVSSPASFPG
YSPSSPIYSPTSPSPEYMPTSPYYSTTSYSPASPTSGYSPTRPYCYSTSRSYSPTSPVYS
PTSPVYSPTSPVYSPTSPVYSPTSPVYSPISPVYSPTSPLYSPTSPVYSPTSPLYSPTSL
SYSPSSPSYSPSSPSYSPSSPFYSPTSPVYSPTSGYSPTSPNYSPTSPSYTPQLGKYSQS
LTYSPSSPRFSPSSSYSPTSPSYSPCKSVGVLDYSPSSPKISPSSGYSPSQPGY
NT seq
5205 nt
NT seq
+upstream
nt +downstream
nt
atggatatccgatttccatattccccggcggaggttgccaaagtccgcatggttcagttc
ggcatacttagccccgacgagattagacaaatgtctgctgtagagatttcgactgctgaa
acaacaaagaatggcaagccgaagccaaaaggcttaagtgatcctaagcttggtaccact
gataaaacgatgaagtgcgagacttgcatgggaaacatggcagattgcccgggccatttt
gggtacctggagcttgccaaacccatgttccatattggattcatgaagaccgtgcttact
atcttgcgttgtgtttgcttcaactgctccaaaattcttgcagatgaggaagaccttaag
tttaagcaagctttgaggataaagaatcctaagaataggttgaaaaagattttggatgct
tgtcagaataaaaccaaatgtgaaggtggtgatgagattgatgtccctggtgaaaacttt
gaagaatcagttaaaaagaggcatggcggctgtggtgcttggctgccaaacttaaaaatt
gatggtatgaaaatcattgcttattacaggaagaagaacaatgatgacgaggaacagctt
cctgaacctatggaaagaaaacagacacttactgcagaaagggttcttagtattttgaaa
cgaataagtgacgaggactgccagttgttaggcttgaatcccaaatatgcccgtccagat
tggatgattcttcaagtgcttccaattccccccccttcagtgagaccttctgtaatgatg
tacaaatcctcccagagtgaggatgatttaacgcaccagttggcaatgattattaagcac
aatgagaatctaaagaaacaggaaaggaatggatcacctgcgcatattatttccgaattt
gctcagttgttgcaattccatatagtcacatacttcaacaatgagttgccaggacttcca
agggttcaacagagatcaggaaggcctattaaatcaatatgtagtaggcttaaagcaaaa
gaaggccggattaggggtaacttgatgggaaagcgagtagatttttcagcacgcacagtt
attactccagatccaactatcaacattgatgaactaggagtaccatggagtattgcttta
aatctgacataccccgagactgtgacgccatataatattgagaggttgaaggaacttgtt
gagtatggaccccatccaccaccaggtaaaactggtgccaaatatatcatacgggatgat
ggacaacggcttgaccttcggtactccaataaaagtagtaatcatcatttggagcttgga
tacaaggtggagcgtcatttgaaagatggagactttgtcctcttcaaccggcaaccgagt
ctgcacaaaatgtctatcatggggcacaaaataaagattatgccttattctactttccgt
ctcaatttgtcggttacttcaccatataatgctgattttgatggggatgaaatgaatatg
catgttcctcagtcacttgaaactagagcagaggtattggagctaatgatggtgcctaaa
tgcattgtttccccccagtcaaatcggccagtaatgggaattgtccaagatacactttta
ggatgtcgtaagatcaccaagagagataccttcataacaaaggatgattttatgaacatc
ttgatgtggtgggaagattttgattgggaaattcctgccccaacaatattgaagccagag
cccctttggactggaaaacaagtattcaatcttataataccaaaacgaatcaatcttatt
agatattctagctggcattccgagactgaaaatggatccataactccaggagatactgtt
gtcagaatagaaaagggggaactgcttactggagccctctgcaaaaagacacttggggca
tctgctggaagtcttgtacatgtcatttgggaagaggttggacctgatgcagctcgcaaa
tttcttggtcagacacagtggcttgtgaattactggcttctgcaaaacgcttttagcatt
ggggaatctgaacctggacggactatgatggattcatttgaaaacaaagtgaaccaggtg
ctaaataaagctcgtgatgaagctggaagtagtgctcagaagagtttatctgagagcaat
aatcttaaagcaatggttaccgcaggatctaaaggaagttttatcaacatatctcagatg
actgcttgtgtgggacagcagaatgttgagggtaagcgaattccatatgggttcatagat
cggacgttgccccactttaccaaagatgattatggacctgaaagtcgtggctttgtggag
aactcatacctgcgcgggctgacgccgcaagagttctttttccatgctatgggtggtaga
gaaggtcttatagatactgctgtcaagacctcagaaactgggtatatccagaggcggctt
gtgaaggctatggaggatattatggtcaagtatgatgggactgtgaggaactcaatggga
gacgtaattcaatttctatacggagaagatggtatggatgctgtttggattgaatcccaa
aagctggattctttgaaaatgaacaaatcagaatttgatagggttttcaggcatgggttt
gatgatgaaaactggaaacctacttacatgcttgaacaacatattgatgatatgaaaatc
attagcgagttccgaaatgtgtttgaggctgaagtccaaaagattgatgcggacagacac
caacttgcgacagaaattgccactacgggtgacagttccttgccactgcctgttaatctg
aagaggctcatctggaatgctcagaaaacctttaaggttgacttccgtagaccttctgat
atgcatccaatggaaattgtggaagctattgataagctccaagagagactgaaggttgtt
ccaggtgaagatttgctgagccaagaagctcagaaaaatgctactctgttgttcaatatt
ctgctgcgtagcactttttccagtaaaagggtaatggaggaatacaggctttctagtgaa
gcatttgattgggttgttggagaaatagagacgcggttcctacagtcgctcgtaggccct
ggggaaatgattggttgtgttgcagcccaatctattggtgagccagcaactcagatgact
ctaaacacctttcactatgccggtgtgagtgcaaagaatgtcactcttggtgttcccagg
ttgaaggaaatcattaatgtggccaagagaatcaaaacgccttctctctctgtctgcctg
aaacctgaagtcaataaaactaaagagagggccaaaaatgtgcaatgtgctttggaatat
accactcttcggactgttactcaagctactgaagtctggtatgatccggatccaatgagc
acaataatagaagaggatgttgattttgtcaagtcttattatgaaatgccagatgaggag
gtctcccccgaaaaaatctctccttggttgcttcgtatagagttaaactgtgaaatgatg
gtggataagaagttaagcatggctgacattgctgagaagattaaccttgaatttgatgat
gatttaacttgtatatttaatgatgacaatgctgaaaatctgatacttcgtatccgtatt
atgaatgatgaagctcctaaaggtgattctgctgaagatgatgttttcttaaagaagata
gagagcaacatgttgactgaaatggctctaagaggtatcccagagatcaacaaggtgttt
ataaaaaatgttaaaattcagaagtttgacaaggacgatggttttaggccacacgatgag
tggatgcttgaaacagaaggtgtaaatcttctagcagttatgtgtcatgaagatgttgac
gccacaagaaccacaagcaaccacttgattgaagttattgaagtttttggaattgaggca
gtacgcaaggccctgctagatgaattgcgtgctgttatatcttttgatggttcttatgtg
aactacaggcatcttgctattctttgtgatgcaatgacctacagaggccacttgatggca
atcacccgtcatgggattaatcgaaatgataatgggcctatgatgagatgttcatttgaa
gagtcagtggacattcttatgggtgctgctgtatatgctgagacagattatttgaagggt
gtaactgaaaatatcatgttgggtcagcttgcccctatcggtactggtgactgtggcctg
ttactgaacgaggagatgctgaaagatgttgttgaacttcaactgccaagttatatggat
ggtctgaataattttggcatgacacctgcttgttctccagtctcagctacaccataccgt
ggaggtttgatgtcaccaaattatctgtctagtcctgatctccgtctatcaccctctaca
gatgctcaattttctccttatgtcagaggaatggtctcctccccagcttcattccctggc
tacagtccatcatctccgatctacagccctacgtctcctagtccagaatatatgcctaca
agtccatattattctaccacttcatacagccctgcatctcctacttcaggatattcacct
acacgtccatattgttattccacttcacgcagctacagccccacttcacctgtatacagc
ccaacatcccctgtatacagcccaacatcacctgtatacagcccaacatcacctgtatac
agccctacttcacctgtatacagcccaatatcacctgtatacagtcctacttcacctcta
tacagcccaacatcacctgtatacagtcctacttcacctctatacagtcctacttctcta
tcctacagcccatcatcaccttcatacagtccatcatcaccctcatacagtccatcatct
ccattttatagccctacttcaccggtgtatagccccacttctggttacagcccaacctcg
ccaaactacagccctacgtctcccagttacactcctcagttaggaaagtacagccagtca
ctaacttactcaccaagcagtccgagattttctccatcaagttcatatagtcctacatct
cctagttacagcccatgtaagtctgttggagttctggactacagcccaagctctccaaag
atcagtcctagttcgggttactcaccaagtcaaccaggttactaa
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