Quercus suber (cork oak): 112005225
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Entry
112005225 CDS
T05868
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03020
RNA polymerase
qsu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
112005225
09124 Replication and repair
03420 Nucleotide excision repair
112005225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qsu03021
]
112005225
03400 DNA repair and recombination proteins [BR:
qsu03400
]
112005225
Enzymes [BR:
qsu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
112005225
Transcription machinery [BR:
qsu03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
112005225
DNA repair and recombination proteins [BR:
qsu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
112005225
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
112005225
NCBI-ProteinID:
XP_023893249
LinkDB
All DBs
Position
Unknown
AA seq
1191 aa
AA seq
DB search
MDDGQEYDQQMNYEEDEDEEIGQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVD
ESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNL
TYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTEL
GECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPS
TMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDT
QMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGE
FCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV
RGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYA
STLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS
AAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVDV
NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRENPEDGGWHDL
VAKGFIEYIDTEEEETTMISMTIPELIQARLSEDAYSGTYTHCEIHPSLILGVCASIIPF
PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP
AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD
RSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLSQDEAQGQASRYSRRDHSIS
LRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP
WTMEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH
KCGYQMRGFETMYNGHTGRRLPAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE
GRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFE
CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEVKPIKDNKKKGA
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atggatgatggccaggaatacgaccagcagatgaactacgaagaagacgaggacgaagaa
atcggtcaggaggatgcctgggctgtcatctccgcctacttcgaagaaaaaggtctggtt
cgccagcaactcgactccttcgacgagttcatccagaacaccatgcaggaaatcgtcgat
gagtccgctgacatcgagatccgcccggagtctcagcacaacccgggccaccagtcggac
ttcgctgagactatctacaagattagctttggtcagatatacttgagtaagcctatgatg
actgagtctgatggggaaactgcgaccttgtttccaaaggctgcaaggttgagaaatcta
acatattcagccccattgtacgtggatgtctcaaaaagagttataaagaaagggcatgat
ggtgaagaagtaactgagactcaggatttcaccaaagtttttattgggaaggttccaata
atgctccggtcaagttattgcacattgttccagaattcagaaaaagatttaactgagctt
ggggagtgtccatatgatcaaggtgggtattttattataaacgggagtgaaaaggtttta
atcgctcaggagaagatgagcaccaaccatgtctatgtgttcaagaagagacagcccaac
aagtatgcctttgtggcagaagttcggtctatggcagaatctcaaaacagaccacctagt
accatgtttgtgcggatgctctctcgaactagtgccaaagggggatcttcagggcagtac
attcgcgccacacttccatatattcgaactgagattcccattattattgtatttcgggct
ttgggttttgttgctgacaaagacatactagagcatatatgttatgacttctctgatact
caaatgatggagttgcttcgtccctccctggaagaagcatttgtgattcaaaaccaacag
gttgcactagattatattggaaaacgaggagcaactgttggtgtaactagggaaaaaagg
atcaagtatgccaaagaaattcttcaaaaggaaatgcttcctcatgttggtgttggagaa
ttttgtgagacgaagaaagcttactattttggatatattattcaccggcttcttctgtgt
gcacttggtcggagggcagaagatgacagggatcactatggcaacaagaggctggacctt
gctggtcccttacttggaggcttatttagaatgctattcagaaaattaactagggacgtg
agaggttatgtgcagaagtgtgtagataatggaaaggatgttaacctccaattcgccatc
aaagcaaagaccatcaccagtggtctcaaatactcacttgccactggaaactgggggcaa
gcaaatgctgctggtacaagagctggagtttcacaggtgttgaatcgcttgacatatgcc
tccaccttatcacatctgagaagactaaattctcccataggacgtgaagggaaattggcc
aaaccccggcagttgcataattcacaatggggaatgatgtgtccagctgaaacacctgaa
ggacaagcatgtggactggtaaagaatcttgcactgatggtgtatataaccgttggatca
gcagcatatcctattttggaatttttggaagaatggggtacagaaaattttgaggaaatt
tctcctgcggttattccgcaagctaccaaaatttttgtcaacggttgctgggttggtatt
catcgggatcctgatatgttggtgaaaacattaagacggctgaggcgaagggttgatgtt
aatactgaagttggggttgttagagatatccgcttgaaagaactgcggatatatactgat
tatggccgttgcagtcgtccactattcattgtggaaaagcaaaggcttctcataaagaag
aaggatatccatgcattgcagcagagggaaaaccctgaggatggtggttggcatgatctt
gttgctaagggattcatagagtatattgacacagaagaagaagagaccaccatgatttcc
atgaccatacctgaacttatacaagcgagactctctgaggatgcttattctggtacttac
acccattgtgaaattcacccttcattgattttgggtgtttgtgcttcaattataccattt
ccagatcataatcagtccccacgtaatacgtatcaatcagctatgggtaagcaagccatg
ggtatttacgtcaccaactaccaatttcgaatggatacattagcttatgttctatattat
cctcaaaagccacttgtaaccacacgagccatggagcatctccacttcaggcagcttcct
gctggcattaatgccattgttgctattgcctgctattctggttataaccaggaagattct
gtcattatgaaccagtcatctatagaccgcggattctttcggtcactatttttccgttca
tatcgggatgaggaaaagaagatgggaactcttgtcaaagaggattttgggcgcccagac
cgttctaataccatgggtatgcgacatggctcttatgataaattggatgatgatggtctt
gcccctcctggtacaagagtttcaggtgaggatgtgatcattggaaagacaactcctctt
tctcaggacgaagctcagggacaagcttcacgttattcacgccgtgatcatagcataagc
ctgcgccacagtgaaactggaatcgtggatcaagttctattgacaacaaatgcagatggg
ctaaggtttgtaaaagtaagggtgagatctgttcgaatacctcaaataggggataaattt
agcagtcggcatgggcaaaaaggaacagtgggcatgacatatactcaagaagacatgcca
tggaccatggaagggatcacccctgatatcattgttaatccgcatgccattccttcacgt
atgacaattggtcaactgattgagtgtatcatgggcaaggttgcagctcacatgggaaag
gaaggagatgctactcctttcacagatgtgactgtggacaatatcagcaaagctcttcac
aaatgtggctatcaaatgcgtggctttgagaccatgtataatggtcacacaggccgacgt
ctacctgctatgatattccttggccccacttactaccaaagacttaagcacatggttgat
gacaagatccattcacgcgggcgtgggcctgtgcagatactgacaaggcaaccggctgag
gggcggtcccgtgatggaggtcttcggtttggagaaatggaacgagattgcatgattgcc
catggtgctgctcactttctcaaagagaggttgtttgaccaaagtgatgcatatcgggtc
cacgtttgtgaacgatgtgggttgatagctattgcaaatttgaagaagaattcttttgag
tgtagaggttgcaagaacaagactgacattgttcaggttcacattccttacgcttgtaag
ctgctcttccaagagcttatggccatggctatagcaccaagaatgctcacaaaggaagtc
aaaccaatcaaagacaataagaaaaaaggagcctga
DBGET
integrated database retrieval system
