KEGG   Rosa chinensis (China rose): 112169409
Entry
112169409         CDS       T06020                                 
Name
(RefSeq) helicase and polymerase-containing protein TEBICHI isoform X1
  KO
K02349  DNA polymerase theta [EC:2.7.7.7]
Organism
rcn  Rosa chinensis (China rose)
Brite
KEGG Orthology (KO) [BR:rcn00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rcn03400]
    112169409
Enzymes [BR:rcn01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     112169409
DNA repair and recombination proteins [BR:rcn03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   DNA polymerases
    112169409
SSDB
Motif
Pfam: DNA_pol_A POLQ_helical HTH_61 DEAD Helicase_C Helicase_dom4_arc ResIII HHH_5
Other DBs
NCBI-GeneID: 112169409
NCBI-ProteinID: XP_024162199
LinkDB
Position
6:64567426..64584353
AA seq 2181 aa
MASGSPPPSRINQFFASKKRKPVSPALKSGRNEKDVKTVEGSPSAKATLDSYLRTSPESY
NVAKPLCKFGDSAARQDQVRRNLASEMDNSSKNECMQHRFSSQLHTHASEASGANQKEIA
KGLTEAGDVVAGGSSTDYSDFAGGVENVELKKFAANFLSLYCSDVQSNKSSVSELKVNGH
KRDPSPSLLDGESKTFKKRHCGSDKSYEERETIRSTEKSYEAMQSACVDKNRVTIPNELL
ELQQTLKTCSNTPKLSLDVVDCYTPGSLIKSCVRQTPNSIRGSSFSSPGEAFWNDAIQLA
DGLCAQAAEATTASDSQYHGINSCNLRNAHCDEKSKEMMDEGERMGNDAVSEPMVKHRKD
LHKEVSPLPVKHFDFSLEDKISNESMPHHIDAYNLKSTAHGGGKQSESSLIDPRGLRHGI
TMVRCSKSQANQGQDVDSVTAVTKMKVDLSSKDNGGPTFSSPGDDVVKLNGKGESSEEST
PSSFLPLKDCLDLDGWLAPEICSIYRKKGISKLYPWQVECLQVDGVLQRRNLVYCASTSA
GKSFVAEILMLRQVLSSGKIALLVLPYVSLCAEKAEHLELLLEPLGKHVRSYYGNQGGGT
LPKDTTVAVCTIEKANFLVNKLLEEGRLSEIGIVVIDELHMVGDPSRGYLLELLLTKLRY
AAGQGISESSSGESSGMSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYQTEFRPVP
LEEYIKVGNTIYNKKMEIIRTIPKAVDLGGKDPDHVVELCNEVVQEGLSVLIFCSSRKGC
ESTARHVSRFLKKFAVNIRTDDSEFNDMTLAIDSLRRCPAGLDPVLEETLPSGVAYHHAG
LTVEEREIVETCYRKGHVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAG
RAGRTGIDTKGESVLICKPEEIKRIMGVLNESCLPLRSCLSEDMNGMTHAILEVVAGGIV
QTANDIHHYVRCTLLNSTKPFQDVVKSAQESLRWLCHKKFLEWNDDTKLYNTTPLGRAAF
GSSLCPEESLIVLDDLSRAREGFVLASDLHLVYLVTPINVDVEPDWELYYEQFMELSALD
QSVGNRVGVTEPFLMRMAHGAPMRSSNRMRENTKALHGNYESQLGTTKSTVLPDDQTVRV
CKRFYVALILSRLVQEVAINEVCEAFKVARGMVQALQENAGRFASMVSMFCERLGWHDLE
GLVGKFQNRVSFGVRAEIVELTTIPFVKGSRARALYKAGLRTPLAIAEASIPEIVKALFE
SSSWAAQEGSAQRRIQVGVAKKIKKAAHKIVLEKAEEARVAAFSAFKSLGLEVPQFSRPL
FPTAGGSPTMQGTTNSSGDENTTSFVNAHVEDALKPSLEGRVPSDKVVSGAKLTKTSDIG
TLVASGEVTSSSVMQIKFGAENSVVPIDGSGALADELNATVHQTKIADLTNSIKVDSLGD
RNRISSESLDPKKQGSCEGENLSVGVKGNACEKGPIHAIYTPGGIDSFLNIWETTSEFHF
DIHYNKRSELNSVAPFEIHGMAICWEDSPVYYVNIPKDLLWSGSSSKDEGLRLTASGDRT
NVLPLDGMLELAKRRWSRIGEIMGKSGVRKFTWMLKSQIQALKCPAVQIQRFGSQSLAGK
SIFFEIIDTSFLLLPPVHIQDGIDMCIVAWILWPDEEKNSNPNLEKEVKKRLSSDAAAAA
NRNGRWKNQMRRAAHNGCCRRVAQTRALYSVLWKLLVSENLAESLINIEVPLVNILADME
LWGVGLDMEGCLQARNVLGKKLRHLEKEAYKLAGMTFSLYTAADIANVLYGHLKLPIPEV
RNKGKQHPSTDKHCLDLLRDEHPIIPIIKEHRTLAKLLNCTLGSICSLARLSVKTQKYTL
HGHWLQTSTATGRLSMEEPNLQCVEHMVDFKMNKYENGGKSDVDHYKINAREYFIPSQDN
WILLTADYSQIELRLMAHFSEDSSLIELLSKPHGDVFTMIAARWTGMSEDCISSDVRDQT
KRLVYGILYGMGANSLAEQLDCSPQAASEKIQNFKSSFPGVASWLNEAVGCCRKKGYVET
LKGRKRFLSKIKFGNSKEKSKAQRQAVNSICQGSAADIIKIAMINIYSVIVDGAEKPDST
SPLATKFHKLKGRCRILLQVHDELVLEVDPSVIKEAALLLQTSMESAVSLLVPMHVKLKV
GRTWGSLQPFQADQYEDLPDP
NT seq 6546 nt   +upstreamnt  +downstreamnt
atggcgtctggttcgcctcctccgtcgcgcatcaatcagttttttgcttcgaagaaacgg
aagcctgtatcacctgctttgaagtcggggagaaatgaaaaggatgtaaaaactgtagaa
ggttcacctagtgctaaggccacattggacagttatttgcggacatcgccggagagttat
aatgtggcgaaacctttgtgcaaatttggtgattcagcggctcggcaagatcaagttaga
aggaatctggcatctgagatggataattcttcaaaaaatgaatgtatgcagcaccgtttc
tcttctcaactgcacactcatgcaagtgaggcttctggagcaaatcagaaggaaatagct
aagggattaactgaagctggtgatgttgtagctggaggttcttccacggattactcagat
tttgcaggaggtgtggagaatgtagagctgaagaagtttgcagccaactttttgtctttg
tattgcagtgatgttcaatcaaacaaaagttctgtgtcagagctgaaagtgaatggtcat
aagagagaccctagcccatctttgcttgatggggagagtaagacatttaaaaagaggcat
tgcggtagtgataaatcctatgaagagcgtgaaacaattcgttctactgagaagagctat
gaagcaatgcaatctgcttgtgttgataaaaatagggttaccattcctaatgaattgctc
gagcttcaacaaaccttgaaaacatgcagtaatacacccaaactgtctctagacgtagtt
gattgttatacaccaggctcattgattaaatcatgtgttcgtcagacccccaattcgata
cgtggtagctcattttcttcacctggtgaagctttttggaatgatgcaattcaacttgct
gatggtctatgtgcccaggcagcagaagcaactacagcttcagatagccaatatcatggt
ataaactcttgcaatttgagaaatgcacactgtgatgaaaagtcaaaggaaatgatggat
gaaggtgagcgtatgggtaatgatgctgtatcagagccaatggtaaagcataggaaggac
ttgcataaagaagtatccccactgcctgttaagcattttgatttctctcttgaggacaag
atttcgaatgaaagtatgccacatcatatagatgcttacaatttgaaaagcacggctcat
ggaggtggcaagcaatctgaatccagtcttatagatcctagaggtctaagacatggtatt
actatggtccgttgcagcaaatctcaggcaaatcaagggcaagatgttgattctgttact
gcagtgaccaaaatgaaagtggatttgtctagcaaggataatggtggcccgacattttct
tcaccaggtgatgatgtcgttaagttgaatggtaaaggtgaatctagcgaagaaagtact
ccttcaagctttctgccactgaaagattgtctggatctagatggttggcttgcaccagaa
atatgcagcatatatagaaagaaaggaatttccaagctttatccttggcaggttgaatgc
cttcaggttgatggtgtattgcagagaaggaatcttgtgtattgtgcatcaacgagtgca
ggtaaaagtttcgttgcagaaattctgatgctgcggcaggtcttgtcatctggaaaaata
gctttacttgtacttccttatgtatcactttgtgcagaaaaggcagaacatctggagcta
cttcttgaaccacttggtaagcatgttcgtagttattatgggaaccaaggtggtggtaca
cttcctaaagacactactgtagctgtctgcacaatagaaaaggcaaactttttagtaaac
aagctgctggaagagggccgtctttcagaaattggaattgttgtgatagatgaactgcac
atggttggcgatccaagtaggggttatcttctggaacttctgttgacaaaacttcgttat
gcagctggtcaaggcatttctgaatcaagtagtggagaaagttcaggcatgagcagcggt
aaggctgaccctgctcatggtttgcaaattgttggtatgagtgccactatgccaaatgtg
gcagcagttgctgattggcttcaagctgccctttaccagacagaatttcgaccggtacca
ctagaagaatacattaaagtggggaacaccatttataacaagaaaatggagattattaga
acaatcccaaaagcagttgaccttggtggtaaagatccagatcatgttgtggaactgtgc
aatgaggttgtacaagaaggtctttccgtgttaatattttgctctagtcgaaaaggatgt
gaatcaacagctaggcatgtttcaagattccttaagaaatttgcagtcaacattcgcact
gatgacagtgaatttaatgatatgacattggctattgattccttacgaaggtgtcctgct
ggtttggatccagtattagaagaaaccctaccttctggagttgcctaccaccatgctggg
ctcacggttgaggaaagagagattgttgaaacctgctaccgtaaaggccatgtacgcgtc
ttaactgcaacatctaccttagcagctggtgttaatctgccagctaggagagtcattttt
cgtcagccccggattggtcgcgattttatcgatgggacaaggtacaggcaaatggctggt
cgggctggtcgtactggcatagatacaaaaggagaaagtgtactaatttgcaagccagaa
gagatcaaaaggattatgggagttcttaatgaaagctgtctgccattgcgctcttgttta
tctgaagatatgaatggaatgactcatgcaatcttagaagttgtagcagggggaattgtt
caaactgctaatgacattcatcactatgttaggtgcacacttttaaactccactaaacct
tttcaggatgtagtgaaatcagcacaggaatctctccgttggttgtgccacaagaaattt
ctagaatggaatgacgacactaagttatacaataccacaccccttggacgtgcagctttt
ggcagttctctatgtcctgaagaatcacttattgtgctggatgatctttcaagagcaaga
gaaggctttgtgcttgcttctgatttgcatctggtttacctagtaacaccaataaatgtt
gatgttgagcctgattgggaactgtattatgaacagttcatggaattgtctgctcttgac
cagtccgtaggcaatcgcgttggagtgacagaaccatttttgatgcgaatggcacatggt
gcacctatgcggtcatcaaacaggatgagagaaaatacgaaagcgttgcatggcaattat
gaaagccaacttgggactacaaagagtactgtgcttccagatgatcaaacagttcgagtt
tgtaaacggttctatgttgctctgatcttgtcaagactagttcaggaagttgctatcaat
gaggtctgtgaagcttttaaagtggctagaggtatggtccaggccttacaagagaatgct
ggaaggtttgcatctatggtatctatgttttgtgaaaggctcggatggcatgatctggaa
ggcttggttggaaaatttcaaaaccgtgtttcatttggagtgagagcagagattgtagag
ctgactacaattccatttgtcaagggttctcgagcaagggcactctataaagctggcttg
cgtacgcctttagctattgctgaagcatccatccctgaaattgtcaaagctctttttgaa
tcttcatcgtgggcagcacaagaaggttcagctcaaagacgcatccaagtaggagtagcc
aagaagatcaagaaggccgcacacaaaattgttcttgaaaaggcggaagaggccagagtt
gctgccttctcagcttttaaatcacttggattggaggtcccacagttttctcgaccatta
tttccaactgctggtggaagtcccactatgcaaggaacaacaaattcctctggtgatgaa
aatactactagctttgttaatgcccatgtggaggatgctcttaagccatctttggaagga
agggttccttctgataaggttgtatcaggtgcgaagttgacaaaaacatcagatattggt
acgttggtggcttcgggagaagtaacttcaagtagtgtcatgcaaattaagtttggggct
gaaaattctgtagtaccaattgatgggtctggtgcccttgctgatgagctaaatgctact
gttcatcaaactaaaattgctgacttgaccaactcgattaaggtagacagcttaggtgat
agaaataggatatccagcgagtctttagatcctaaaaagcagggaagctgtgaaggggaa
aatttgtctgttggtgttaagggcaatgcttgtgaaaaaggccctattcatgcaatttat
actcctggtggtatcgattcatttttgaatatttgggaaaccacctcagagtttcatttt
gatatccactacaacaaaagatcagaattgaactctgttgccccctttgaaatacatgga
atggccatctgttgggaagattctcctgtgtactatgttaacattcctaaggatctgctg
tggtctggcagcagcagtaaagacgaagggctgcgtttgactgcatcaggtgatagaact
aatgtgttacctcttgatggtatgttggagctggctaaacgtagatggagcaggattggt
gaaatcatggggaaaagtggtgtcaggaaatttacttggatgttgaaaagtcagattcag
gcactgaagtgccctgcagttcaaatacagagatttggttcccagagtcttgcaggaaaa
agtattttttttgaaattatagacacctcgtttttattgttgccaccagttcatatacaa
gatggcattgacatgtgcattgtggcctggattctttggcctgatgaggagaaaaattct
aatccaaacttggaaaaggaagttaagaaaaggttatccagtgacgctgcagcagctgca
aatcgaaacggcaggtggaaaaatcagatgcgaagagctgcacacaatggttgctgccgt
cgagttgctcaaacacgggccttatattctgttctgtggaagttgcttgtttctgaaaac
cttgctgagtcacttataaatatagaagttccattggttaatattcttgctgacatggag
ctttggggagtgggtcttgatatggagggatgtctgcaagcacgtaatgtgctggggaaa
aagctaagacatcttgagaaagaagcttataaactggctggcatgacattttcattatat
acagcagcagatattgctaatgtgctttatggacacttaaagctgcccataccagaggtg
cgcaacaagggaaaacaacatccaagtactgacaagcattgcttggatttactaagggac
gagcatcctattattcccatcatcaaagagcatcgtacattggcaaaactcttaaactgt
acgttgggatcaatttgctcacttgctaggctatctgtgaagacacagaagtacacatta
cacggtcattggctccaaacatcaacagctactggtcggctttcaatggaggaacctaat
ctccagtgtgtggaacatatggttgacttcaaaatgaacaagtatgaaaatggaggcaaa
agtgatgttgatcattacaaaattaatgctcgagaatactttataccctctcaggacaac
tggatactgttgaccgcagattattctcagatagaactgcggctgatggcccatttttct
gaggattcctcactcattgaactccttagtaagccccatggtgatgtcttcaccatgatt
gcagctagatggactggaatgtcagaagattgtattagttctgatgtacgagatcagacc
aaaaggttggtgtatggaattctgtacggaatgggtgctaatagccttgcagaacaactg
gattgcagtccccaggcagcttctgagaaaatacaaaacttcaaaagttctttccccgga
gttgcttcttggctcaatgaagcagttggatgttgccgcaagaaaggatatgtggaaacc
cttaagggaagaaaacgatttttgtcaaaaataaaatttgggaacagcaaggaaaagtca
aaggcgcagagacaggctgtaaattcgatatgtcagggatcagctgctgacataatcaag
attgcaatgataaatatttactccgtaatagttgatggagctgaaaagcctgattcgact
tctccacttgcaacaaagtttcacaaactgaagggccgctgccgaattctattgcaggta
catgatgaattggtacttgaagttgatccttctgtgataaaggaagctgctttgctgtta
caaacaagcatggaaagtgctgtttcgcttcttgttcctatgcatgtcaaattgaaagtt
ggaagaacttggggttctttgcaaccctttcaggctgaccaatatgaagatctgcctgat
ccataa

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