Rosa chinensis (China rose): 112180278
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Entry
112180278 CDS
T06020
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase isoform X1
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
rcn
Rosa chinensis (China rose)
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rcn03016
]
112180278
Enzymes [BR:
rcn01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
112180278
Transfer RNA biogenesis [BR:
rcn03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
112180278
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
TraT
DUF6447
Motif
Other DBs
NCBI-GeneID:
112180278
NCBI-ProteinID:
XP_024174573
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All DBs
Position
7:complement(51333299..51342447)
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AA seq
627 aa
AA seq
DB search
MEDIEDLFIGGGGAPPGFRLPVTSVGLNPKKKKKPDLNGNLSQIKHPLAPLSPKVPGTQT
IYIKTFGCSHNQSDSEYMAGQLSAFGYSLSDNPEDADLWLINTCTVKSPSQSAMDTLIAK
GKGAKKPLVVAGCVPQGSRDIKELDGVSIVGVQQIDRVVEIVEETLKGHEVRLLSRKTLP
ALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVDGLVGRVKSVIADGVRE
IWLSSEDTGAYGRDIGVNLPILLNAIVKELPPDASTMLRIGMTNPPFILEHLKEIAEVLR
HPCVYSFLHVPVQSGSDAVLTAMNREYTVSEFKTVVDTLTELVPGMQIATDIICGFPGET
DEDFAQTRDLIKEYKFPQVHISQFYPRPGTPAARMKKVPSTVVKNRSRELTSVFEAFTPY
VGMEGRVERIWITEVAADGTHLVGHTKGYVQVLVAGPESMLGTSAIVKITSVGRWSVFGE
VIETIPESNDKAAVGKERQSQENCFPCSNNFETCACSTEPETCACGPESCGEQATLTKCS
VTTTGVPLEDQNNRNLIGWLLRKRKNQVQKFVENEIDLGLKKKQGQTQESIGKWGVVDKA
LLGGMLASFLTIVAVLAHLGFRIMSSK
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atggaggacattgaggatttgttcattggtggcggaggagctcctccgggtttccgcttg
ccggttacatccgtcggactcaatccaaagaagaagaagaaacccgatctcaatggcaac
ctctctcaaatcaaacacccactcgctcctctctcccctaaagtccctggcactcagact
atatatatcaagacatttggatgctcccacaaccagagtgacagcgaatatatggctggt
caactttcagcttttggttattcgttaagtgacaatcctgaggatgcagacctatggctc
ataaatacatgcacagttaaatctccaagccaatctgccatggacactctgatagcaaaa
ggcaaaggtgcgaaaaagcccctggtggtagctgggtgtgtgcctcaaggaagtcgagat
ataaaggagctagatggtgtcagtatagtaggagtccagcaaattgaccgtgtggttgaa
attgttgaagaaactttgaaaggtcacgaggtgcggcttttaagccgtaagacattgcca
gcactggacctccctaaggtgagaaaaaacaagttcgttgagattcttcccattaatgtt
ggctgtttaggtgcttgcacatactgcaaaacaaagcatgcccgtggtcatttagggagt
tacaccgttgatggacttgtgggacgtgtaaaatctgtgatagctgatggagtcagggaa
atatggttgagcagtgaagatactggagcatatggtcgtgacattggggtcaatctacct
attttattgaatgcaattgtcaaggagcttcctcctgatgcaagcacaatgcttcgaatt
ggaatgacaaatccccctttcattctagagcacttgaaagaaattgcagaggtgttgcgg
catccatgtgtatactcatttcttcatgtaccagtccaatctggaagtgatgccgtcttg
actgcaatgaatcgagaatatacagtgagtgagttcaagactgttgtagatactttaact
gagcttgtgccagggatgcagattgcaactgatataatttgtggatttcccggtgaaacg
gatgaagattttgctcaaactcgcgaccttatcaaggagtacaagtttcctcaagttcat
atttcacagttctatcctcgacctggaacacctgctgcaaggatgaaaaaggtccccagt
actgtagtgaagaataggagtcgtgaattaacttctgtttttgaagctttcaccccgtat
gttggaatggaaggcagggtggaaaggatttggataacagaagttgccgctgatggtact
cacttggtcggtcataccaagggatatgtgcaggtgcttgtagctggtccagaaagtatg
ctggggacttcagctattgtgaagataacgtcagttggaaggtggtcggtatttggagaa
gtaattgagactatccctgaatcaaatgataaagcagctgtgggaaaagaaaggcagagt
caggagaattgtttcccctgctcgaacaattttgagacttgtgcttgttcaacagagcct
gaaacttgtgcttgtggaccagaaagttgtggagaacaggctacattgacaaaatgttct
gtaacaactactggcgttccacttgaagatcagaacaacagaaatctgattggatggtta
ctaaggaagcgaaagaaccaagttcagaaattcgtggagaatgaaattgacttgggatta
aagaaaaagcaagggcagacccaagaaagcattggtaaatggggtgttgtagataaggct
cttctaggtgggatgctagcgagcttcctgactattgtagctgtactagcacatcttgga
tttagaattatgtcatctaagtag
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