Rosa chinensis (China rose): 112202464
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Entry
112202464 CDS
T06020
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03020
RNA polymerase
rcn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
112202464
09124 Replication and repair
03420 Nucleotide excision repair
112202464
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcn03021
]
112202464
03400 DNA repair and recombination proteins [BR:
rcn03400
]
112202464
Enzymes [BR:
rcn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
112202464
Transcription machinery [BR:
rcn03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
112202464
DNA repair and recombination proteins [BR:
rcn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
112202464
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
112202464
NCBI-ProteinID:
XP_024199247
LinkDB
All DBs
Position
5:complement(5296660..5303374)
Genome browser
AA seq
1191 aa
AA seq
DB search
MEEEPEYEEQYNEEDDEDEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE
AADIEIRPESQHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT
YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG
ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAESQNRPPST
MFVRMLSRTSSKGGSSGQYIRATLPYIRSEIPIIIVFRALGFVADKDILEHICYDFSDTQ
MMELLRPSLEEAFVIQNQQVALDYIGKRGATAGVPRDKRIRYARDILQKEMLPHVGVGEF
CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGSLFRSLFRKLTKDVK
GYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS
TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA
AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVRTLRKLRRRVDVN
TEVGVVRDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHALQQRENPEDGGWHDLV
AKGFIEYIDTEEEETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLILGVCASIIPF
PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP
AGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD
RANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPEEAQGQAASRYSRRDHSI
SLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM
PWTVEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL
HKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA
EGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSF
ECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDVKPIKEKKKGA
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagagccggagtacgaagagcagtacaacgaggaggacgacgaagatgagata
acgcaggaagacgcgtgggctgtgatttcagcctatttcgaagagaagggtttagtgagg
cagcagctggactcgttcgatgagttcattcagaacacaatgcaggagattgtcgacgag
gccgctgatatcgaaatccgacccgaatcgcagcataacccgggtcaccagcccgatttc
gcggagactatatacaaaatcagcttcggtcagatttatctgagtaagcctatgatgact
gagtcggatggtgagactgcaacgctgtttccgaaagctgcgaggttgcgaaacttgacc
tactcggcgcctttgtatgtggatgtgaccaagagggttataaagaaaggacatgatggt
gaagaagttactgagactcaggatttcaccaaagtgttcattggaaaggtcccaattatg
ctccgttcgagttattgtacattgtatcagaattcggagaaagacttgacggagctgggg
gagtgtccttatgaccaaggcgggtatttcattatcaatgggagtgagaaggtgttgatt
gctcaggagaagatgagcacgaaccacgtctatgtcttcaagaagaggcagcctaataag
tatgcttatgttggggaggtacggtctatggcggagtcccaaaaccgaccccccagcacc
atgttcgttcgtatgctttcccggacgagctccaaagggggttcttcaggacaatacatt
cgtgctactcttccgtatattcgatctgagattcccattattattgtcttccgggctctt
gggtttgtggcagacaaagacattttggagcacatatgctatgatttttcagatacgcaa
atgatggagttgcttcgtccttccctggaagaagcatttgttattcagaatcaacaggtg
gctctagattatattggtaaaagaggtgcaacagctggggtacctagagacaagaggata
aggtatgcaagagatattcttcaaaaggaaatgcttccacatgttggtgtcggggagttt
tgtgagaccaagaaagcatattatttcggatacatcattcacaggcttctactgtgtgca
cttggtcggagagcagaagatgatagggatcactatggaaataagaggctagatcttgct
ggccccttactcggaagcttgtttagatcgctattcaggaagctgaccaaggatgttaaa
ggttatgttcagaagtgcgttgataatggaaaggatgtcaacctgcaatttgcaattaaa
gcaaaaaccattaccagtggtctcaaatattcacttgctactgggaactgggggcaagca
aatgcagctgggacaagggctggagtgtcgcaggttttaaatcgtttgacatatgcatct
acattatcacacttgcgaaggctaaattctcccatagggcgtgaagggaaattggccaaa
ccccggcagttgcacaactcacagtggggaatgatgtgtcccgctgagacacctgaaggg
caggcatgcggacttgtaaagaaccttgcattgatggtctacataactgtgggatcagct
gcatatccaatcttagaatttttagaagaatggggtacagaaaattttgaggaaatttcc
cctgctgttattccccaagccacaaagatttttgttaatggctgctgggttggcatacat
cgtgatcctgaaatgttggtgagaacattaaggaagctaaggcggcgggtggatgtcaat
actgaagttggggttgtaagagatatccgtctgaaagaattgcggatatatactgactat
ggtcgttgcagtcgtccattattcattgtggacaagcaaaggctgcttataaagaagaaa
gatattcatgcattgcagcagagggaaaaccctgaagacggtggttggcatgatctcgtg
gcaaaaggatttatagaatatattgacactgaagaagaggagaccactatgatttcgatg
acaattaatgatcttgtacaagcaaggctcaatcctgaggaggcatattctgacacttac
actcattgtgaaattcacccgtcacttatattgggtgtttgtgcttcaattataccattt
cctgatcataatcagtctccacgtaatacatatcaatctgccatgggaaagcaagctatg
ggaatttatgtcaccaattatcagttccgaatggatacactggcttatgttctgtactac
cctcagaagccacttgttactacacgagccatggagcatcttcacttccggcaacttcca
gctggaattaatgccattgttgccatttcctgctactctggttataatcaggaagattct
gtcattatgaatcaatcctctatagatcgtggatttttccggtcactgttcttccgctcc
tatagggatgaggaaaaaaagatggggacccttgtcaaagaagattttggacgtccagac
agagcaaatacgatgggtatgcggcatggttcttatgataaattggatgatgatggtctt
gcacctcctggaaccagggtttcaggtgaggatgttatcatagggaagactactcccatt
gctccagaggaggctcaggggcaagctgcttcacgttactcacgacgtgaccatagtata
agcttacggcacagtgaaactgggattgtggaccaggttttattgactaccaatgctgat
gggttgaggtttgtgaaagtgagggtgaggtctgttcgaattccacagattggggataaa
tttagcagtaggcatggacagaaagggacggtgggtatgacatatacacaagaagacatg
ccgtggactgtagaaggtgtcacccctgatattattgtgaaccctcatgctattccttcc
cgaatgaccattggtcagcttattgagtgtatcatggggaaggttgcagcacacatggga
aaggaaggagatgctactccctttacggatgtgactgtggacaatattagcaaagctctt
cacaaatgtgggtatcaaatgcgaggatttgagaccatgtataatggtcacactggtcgg
cgactgagtgcaatgatattccttggccctacatattaccagagattgaagcatatggtt
gatgataagatccattcacgtggtcggggtcctgtacagatcctcacaaggcagcctgct
gagggacggtctcgtgatggtggtttacgatttggagagatggaacgagattgcatgatt
gcccacggtgctgctcactttcttaaagagagattgtttgatcagagtgatgcctatagg
gttcatgtctgcgagcgttgtggtttaatagctattgcaaatctcaagaagaattcattc
gagtgcagaggttgtaagaacaaaactgatattgttcaggttcacattccttatgcctgc
aagctgctattccaagagcttatggccatggctatagcaccaagaatgctcacaaaggat
gtcaagcctatcaaagaaaagaagaaaggagcctga
DBGET
integrated database retrieval system
