Rhodobacter capsulatus: RCAP_rcc03142
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Entry
RCAP_rcc03142 CDS
T01213
Name
(GenBank) RNA modification enzyme, MiaB family
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
rcp
Rhodobacter capsulatus
Brite
KEGG Orthology (KO) [BR:
rcp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rcp03009
]
RCAP_rcc03142
Enzymes [BR:
rcp01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
RCAP_rcc03142
Ribosome biogenesis [BR:
rcp03009
]
Prokaryotic type
ribosomal protein modification factors
RCAP_rcc03142
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
TRAM_2
UPF0004
TRAM
Thioredoxin_6
CLP1_P
Motif
Other DBs
NCBI-ProteinID:
ADE86866
UniProt:
D5AR61
LinkDB
All DBs
Position
complement(3338977..3340371)
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AA seq
464 aa
AA seq
DB search
MSQNPPNLRPDLAPKALVTDTPRPGQPTIGMVSLGCPKALVDSERILTRLRAEGYAISPS
YQGADAVIVNTCGFLDSAKAESLEAIGEALSENGKVIVTGCLGAEPEFITGVHPKVLAVT
GPEQYEQVLDAVHGAVPPKPDPFVDLLPATGIKLTPRHFSYLKISEGCNHACKFCIIPDM
RGKLVSRPAHAVLREAEKLLEAGVRELLVISQDTSAYGLDRRHEATAWKGAEVRAHITDL
TRELGKLAQPSGAWVRLHYVYPYPHVRELIPLMADGLVLPYLDIPFQHAHPETLKRMARP
AASAKTLDEIAAWRADCPEIVLRSTFIVGYPGETEAEFQYLLDWMAEAQLDRVGCFQYEN
VKGARSNDLPDHVPAEVKQERWERFMEAAQAISEAKLAAKVGTVQQVLVDAVDDEGATCR
TRADAPEIDGNLFIDEGFEDLSPGDMVTVEVEEASDYDLWGRVQ
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgagccagaacccgcccaacctccgccccgatcttgcgccgaaagcgcttgtcaccgac
accccccgcccgggccagccgacgatcggcatggtctcgctgggctgccccaaggcgctg
gtggacagcgaacgcatcctgacccggctgcgggccgagggctatgcgatctcgcccagc
tatcagggcgccgatgcggtgatcgtgaacacctgcggctttctggacagtgccaaggcc
gaaagcctggaagccatcggcgaggcgctgagcgagaatggcaaggtgatcgtcaccggc
tgtctgggcgccgagcccgagttcatcaccggcgtgcatcccaaggtgctggccgtcacc
gggcccgagcaatacgaacaggtgctcgatgcggtgcatggggcggtgccgccgaaaccc
gatccctttgtcgatctgctgcccgcgaccggcatcaagctgacgccgcggcatttcagc
tatctgaagatctccgagggctgcaatcacgcctgcaagttctgcatcatccccgacatg
cgcggcaaactggtcagccgcccggcccatgcggtgctgcgcgaggcggaaaagctgctc
gaggcgggggtgcgggagctgctggtgatcagccaggacacctcggcttatgggctggat
cggcggcacgaggcgacggcctggaaaggcgccgaggtccgcgcgcatatcacggatctg
acgcgcgagctgggcaagcttgcccagccctcgggcgcctgggtgcggctgcattacgtc
tatccctatccgcatgtgcgcgagctgattcccctgatggcggatgggcttgtgctgcct
tacctcgacatcccgttccagcatgcccatccggaaacgctcaagcgcatggcccggccc
gcggcttctgcgaagacgctggatgaaatcgccgcctggcgtgccgattgccccgagatc
gtgctgcgttcgaccttcatcgtcggctatcccggcgagaccgaggcggaattccagtat
ctgctcgactggatggccgaggcgcagctcgatcgtgtcggctgcttccagtatgaaaac
gtcaagggcgcgcggtcgaacgatttgcccgaccatgtgcctgcggaagtgaagcaggaa
cgctgggaacgcttcatggaggccgcgcaggcgatttccgaggcgaagctggcggccaag
gtcggcaccgtgcaacaggtgctggtcgatgcggtggatgacgagggggcgacctgccgc
acccgcgccgatgcgcccgaaatcgacggcaatctgttcatcgacgagggattcgaagac
ctgtcgccgggcgacatggtgacggtcgaagtcgaggaagcgtcggattacgacctttgg
gggcgtgtgcaatag
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