KEGG   Ricinus communis (castor bean): 8270883
Entry
8270883           CDS       T01087                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 1 isoform X1
  KO
K16251  DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
Organism
rcu  Ricinus communis (castor bean)
Pathway
rcu03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rcu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    8270883
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rcu03021]
    8270883
Enzymes [BR:rcu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     8270883
Transcription machinery [BR:rcu03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     8270883
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_3
Other DBs
NCBI-GeneID: 8270883
NCBI-ProteinID: XP_048233708
LinkDB
Position
8:complement(13553297..13568884)
AA seq 1974 aa
MEDKENTQSSFLEGEVVGIKFGLATYKEISAASVSDCPISHSSQLTNPFLGLPLEFGKCE
SCGTSEPGKCEGHFGYIELPIPIYHPSHVSELKRMLSLLCLKCLKLKTNKFQIKSSGVAE
RLFSCCEEAAQISIKEVKTTDGAYILQLKLPSRMRLRDGFWNFLERYGFRYGDDITRTLL
PCEVLEMLRRIPQDTRKKLAKKGYFPQDGYIMRYVPVPPNCLSVPDISDGVSVMSSDLSI
SMLKKVLKQVEIIKSSRSGEPNFESHEVEAVDLQSAVDQYLQVRGTAKSARDVGERFGVH
KESNDSSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKCVNEIGIPSEIAQRITFEERVN
AHNMQYLQELVDNKLCLTYRDGSSTYSLREGSKGHTFLRLGQIVHRRIMDGDMVFINRPP
TTHKHSLQALSVYVHDGHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVE
KQLLSSHSGNLNLQLTSDSLLSLKTMFNTYFLDRAAAQQLAMFVSSSSLPQPALWKAHCS
VPIWTALQILQTALPSQFDCSGERYLISNTDIVKVDFSRDVVQAVINDIVISMFFEKGPD
AVFKFFNSLQPLLMESLFSEGFSVGLEDFYISRAAIGGTRRDFKVISSLLSQLRSTYNEL
MALQLENHIRRAKLPVADFIVRLSSIGDLIDYKSDSAMTKVVQQIGFLGLQISDRGKFYT
KTLVEDMALHFESKYPSDIDYPSAKHGLIQSCFFHGLDPYEEMVHSISAREVMVRSTRGL
SEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGMKAGIKAQSLFPAGEPVGVLA
ATAMSNPAYKAVLDSTPSSNSSWELMKEILQCRVNFKNDITDRCVILYFNYCGCGKFYCQ
ERLAYSVKNHLEKVILKDIALCFMCEYKSQPTIADAGLVGHVHLKKTKLQELNVSMEVIH
RKCSETISSFGKKKKMGNLFKKIEVSFSECCSFQCADDRSGMPCLMFFWQDITDIHLERS
THIFADVICPVLLDTIIKGDHRVSSANIVWISPDTTTWIRNPSRTQKGELALDVVIGKSA
VKQSGDAWRVVLDSCIPVLHMIDTTRSIPYAIKQVQELLGVSCAFDQAVQRLSSSVTKVA
KGVLKEHLILLANSMTCTGNLVGFTSGGYKSLTHSLDVQVPFTEATLFTPRKCFERAAEK
CHIDTLSSVVASCSWGKHVAVGTGSHFDVLWDQKEACLNQEGTINVYEFLNMVRSSKYGE
ESASACLGAEVDDLMLDDGVDDWNLSPEQTDKPVFEDRDEFKNFLDNESAEVNWEKVSHI
ENGVSGNGNWGLDKDVGTAEEESWSSWGRSTAKTQNSLSTKTQEPDRSGVWDTAKEHVEV
AGSQGWGKPRIAEVSHGWGSSEEHIEAASSHGWGLSNVGGRGETEKEQPWGQPKSPQVSH
GWGSAKDSVNWGSSKEHVEAPSSQGWGLSNAGGSSENEKEQQWDKPKSPQVSHSWGSSKD
SVNWSSCKEHIEAAGSQGWGLSNAGGSSENEKEQQRGKPKSPQVSQSWGSVKDSMNWGSS
KEYVVAPSSQGWGLSNAEGSSENEKEQQWGKPKSPQVSHSWASAKDSVNWSSSKEHVEAA
GSQGWGPSNAGGSSENENQLQWGSAKSPQDSHGWEFAKESVKAASSKDWSLPNARGSDER
ETEQQWGRPKSPQVSHGWGSPKESVKAASSQGWGLPNAGGSDECESQQQWGRPKSPQVSH
GWGSPKESTEAASSQGWGLPNPGGSDLNGRQRQWGKPSGELKKSSRGWGSNNADWKGKSR
PAKLQGNTHDDSSASLMYTVTRQRLDMFTSQEQDILSDVEPLMRSIRRIMHQSGYNDGDS
LSAADQSYVLDNVLNYHPDKAAKMGAGIDHVIISKHSTFQESRCFYVVSTDGCKQDFSYR
KCLENFIKGKYPDMAEEFIGKYFKPRQRGNQPQTPVATPVATPVAEATEVDSEA
NT seq 5925 nt   +upstreamnt  +downstreamnt
atggaggacaaggaaaatactcaatcgagttttttagagggggaggtagttggaatcaaa
tttggtttggcaacttataaagaaatttctgcagcatctgttagtgactgccctataagc
cattccagtcagcttacaaatccttttcttggtttgcctcttgaatttggcaaatgcgag
tcttgtggcacttctgaacctggaaagtgtgaaggtcattttggatatatagaactgcca
ataccgatctatcatccgagccatgtcagcgaattgaagcgtatgttaagcttgttatgt
ttaaagtgcttgaaactgaaaaccaacaagtttcagatcaagagcagtggtgtggcggaa
cgattgttttcttgttgtgaggaggctgcacaaatttctatcaaggaggttaaaacaaca
gatggtgcctatatcttgcaattaaagttaccatccagaatgagactaagagatggcttt
tggaattttttagaaagatatggttttcgctatggtgatgacataactcggacgttactt
ccatgtgaggtactggaaatgctaaggagaatcccacaggacaccagaaaaaagcttgca
aaaaaagggtattttccccaagatggttatattatgcgatatgtaccggttcccccaaac
tgtttgtcagtgccggacatttcagatggtgtcagtgtcatgtcctcggatttatctata
tctatgcttaagaaagttcttaagcaagtcgagataattaagagctcacgctcaggtgaa
ccaaattttgagtctcatgaagttgaagccgttgatttgcagtcagcagtggatcaatac
cttcaagttaggggcactgcaaaatctgctcgtgatgtaggagaacgatttggagttcac
aaggagtctaatgattcgtcaactaaagcatggcttgagaagatgagaaccttgttcata
agaaagggctctggattctcttcgcggagtgtgattacaggtgatgcatacaagtgtgtg
aacgaaattggtattccgagtgagattgctcaacgaatcacatttgaagagagggtcaat
gcacacaatatgcaatatctacaagagcttgtggacaacaagttatgcttgacatatagg
gatgggtcttccacttattcactaagggaaggttctaagggacacacttttcttcggctt
ggtcaaattgtccaccggaggataatggatggagatatggtcttcattaatagaccacca
acaacacataagcattctctgcaagcactttcagtctatgtgcatgatggtcatacagtg
aaaatcaatcctctaatatgtgggcccttgagtgctgattttgatggtgattgcattcat
ctattctatccccaatctcttgctgcaaaagcagaagtcttggagctgttttcagttgag
aaacagttgcttagctctcacagtggaaatttgaatttgcagctgacttctgattctctt
ttgtcattaaagaccatgttcaatacatacttcttggacagagcagctgctcagcaatta
gctatgtttgtatcttcttcttctttgccgcagcctgctttatggaaagctcactgttca
gtgccgatttggactgctcttcagatattgcagactgctttaccttctcagtttgactgc
tcaggagaaagatacttgatcagtaatactgatatagtaaaggtggatttcagtagggac
gtagtgcaggctgttatcaatgacattgtgatctctatgttttttgagaaaggtcctgat
gcagttttcaagttcttcaattcattgcagcctttgttgatggaaagtctgttttctgaa
ggttttagtgtgggtttggaggacttctacatatctagggctgccatagggggtactcgg
agagatttcaaggtcatttcttctttgctaagtcagttaagatcaacttacaatgaactg
atggcattgcaattagaaaaccacatccgtcgtgctaaactacctgttgcagattttatt
gtgaggttatcttcaataggtgatttaattgactacaagagtgattcagccatgactaag
gtggttcaacaaattggcttcttgggccttcaaatatcagatagaggaaagttctacact
aagactctggtcgaagacatggctttgcattttgagagcaaatatccttctgatatagat
tatccatctgcaaaacatggattaattcagagttgtttttttcatgggttagatccatat
gaagaaatggttcattcaatatctgcgagagaggttatggttcggtctactagaggatta
tctgaacctgggaccttattcaagaacttaatggccatccttcgagatgtggttatttgt
tacgatgggactgtgagaaatgtatgcagcaattcaatcatccaatttgagtatggaatg
aaggcaggaattaaggcacagagtttattccctgcgggtgaacctgttggcgtgttagct
gcaactgccatgtccaatcctgcatataaggcagttcttgattccactccaagtagcaat
tcctcatgggagctgatgaaggaaatacttcagtgcagagttaactttaagaatgatatt
actgatcgttgtgtcattttgtacttcaactactgtggttgtgggaaattttactgccag
gaacgattagcctattcagtgaagaatcatttggagaaagttattcttaaagacattgcg
ttgtgttttatgtgcgaatacaagagtcagccaacaatagcagacgccggccttgttggt
catgttcatcttaaaaagacgaagttgcaggagttgaatgttagtatggaggttattcat
cgtaagtgcagtgagactatcagttcatttggaaagaagaaaaaaatgggaaatcttttc
aaaaagatagaggtatctttcagcgaatgttgttccttccagtgtgctgatgacagatct
ggcatgccgtgcttgatgttcttttggcaagatattacagatattcatttggagagaagc
acacatatctttgctgatgtgatttgcccagttctattggacacaatcatcaaaggtgac
catcgagtttcctctgcaaacattgtttggattagtccagatacaacaacttggataaga
aatccttctaggactcagaagggggaactagctctagatgttgtcattggcaaatcggct
gtgaaacaaagtggtgatgcatggagagttgtcctagattcctgtattcctgttcttcat
atgattgataccacgcggtctataccatatgcgattaaacaagttcaggagttgttggga
gtttcttgtgcatttgatcaagcagtccagcgcctctcaagctcagtgacaaaagtggcg
aaaggtgtgctaaaggagcatctcattctcctggcaaatagcatgacatgtactggaaac
ttagttggctttacatctggtggttacaaatcattaacccactcattggatgtccaagta
ccatttactgaggcaacactatttacaccaaggaaatgttttgagagagctgcagagaag
tgtcatatcgatactttatctagtgtagttgcgtcttgttcttggggaaaacatgtggca
gttggtacgggatcacactttgatgtgctgtgggaccagaaggaggcctgtttaaatcaa
gagggaaccataaatgtctatgaatttcttaatatggtgagaagttctaaatatggggaa
gaatcagcttctgcctgtttaggtgcagaagttgatgaccttatgctggatgatggagtt
gatgactggaacctgtccccagaacaaactgataagcccgtatttgaagatagagatgag
tttaagaatttcttggacaatgaatctgctgaggttaattgggaaaaggtttcacatatt
gagaatggggtcagtggcaatggaaattggggccttgataaggatgtgggaactgcagaa
gaagaatcttggtctagctggggaaggagcacagctaagacacaaaattctctctccaca
aaaacacaagaacctgataggtccggtgtttgggatactgctaaagaacacgttgaagtg
gcaggttcacaaggttgggggaaacccaggatagctgaagtttcacatggctggggctct
tctgaagaacacattgaagcagcaagttcacacggttgggggctgtcaaatgtgggaggc
cgcggtgaaactgaaaaagaacagccgtggggtcaacccaaatcaccacaagtttcacat
ggctggggctctgccaaagattctgtgaactggggctcgtctaaagaacatgttgaagca
ccaagttcacaaggttggggcctgtcaaatgcaggaggcagcagtgaaaatgaaaaagaa
cagcagtgggataaacctaaatcaccccaagtttcacatagctggggctcctccaaagat
tctgtgaactggagctcgtgtaaagaacatattgaagctgcaggttcacaaggttggggg
ctgtcaaatgcgggaggcagcagtgaaaatgaaaaagaacagcaacggggtaaacctaaa
tcaccccaagtttcacaaagctggggctccgtcaaagattctatgaactggggctcatcc
aaagaatatgttgtagcacccagttcacaaggttgggggttgtcaaatgcagaaggcagc
agtgaaaatgaaaaagaacagcagtggggtaaacctaaatcaccgcaagtttcacacagc
tgggcttctgccaaagattctgtgaactggagctcatctaaagaacatgttgaagctgca
ggttcacaaggttgggggccgtcaaatgccggaggcagcagtgaaaatgaaaaccaactg
cagtggggtagtgctaaatcaccccaagattcacatggctgggaattcgccaaagagtct
gttaaagcagcgagttccaaagattggagcctgccaaatgcaagaggcagcgacgaaaga
gaaacagaacagcagtggggtagacccaaatcacctcaagtttcacatggctggggctct
cccaaggagtccgttaaagctgcgagttcccaaggttggggcttgccaaatgcaggaggc
agtgatgaatgtgaaagtcaacagcagtggggcagacccaaatcaccccaagtatcacat
ggctggggctctcccaaagagtctactgaagcagcaagttcccagggttggggcctgcca
aatccaggaggcagtgatttaaatggaagacaacggcaatgggggaaaccaagtggagag
cttaagaaaagctcgagaggttggggttcaaataatgcagattggaaaggcaagagccgc
cctgctaagctgcaaggaaatacccatgatgattctagtgccagtctgatgtatactgta
accaggcagagattagacatgtttacttctcaagagcaggatattctttctgacgttgag
ccattaatgcgatccatcagaagaataatgcatcaatctgggtacaatgatggggattca
ctgtctgctgctgaccagtcatatgtgcttgataatgtcttaaactatcatccagataaa
gcagcaaagatgggtgctggcattgatcacgtcataattagcaagcatagtactttccag
gaaagcaggtgcttctatgtagtttcaactgacggttgcaaacaggatttttcctaccgg
aaatgtttggagaatttcataaaagggaagtatcctgacatggcggaggaattcatcggc
aagtatttcaaacctcgtcaaagaggcaaccaaccgcaaaccccagttgcgactccagtt
gcaaccccagttgcagaggcaaccgaggttgatagtgaggcataa

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