Roseobacter denitrificans: RD1_0839
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Entry
RD1_0839 CDS
T00376
Symbol
gabT
Name
(GenBank) 4-aminobutyrate transaminase
KO
K07250
4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:
2.6.1.19
2.6.1.22
2.6.1.48
]
Organism
rde
Roseobacter denitrificans
Pathway
rde00250
Alanine, aspartate and glutamate metabolism
rde00280
Valine, leucine and isoleucine degradation
rde00310
Lysine degradation
rde00410
beta-Alanine metabolism
rde00640
Propanoate metabolism
rde00650
Butanoate metabolism
rde01100
Metabolic pathways
rde01120
Microbial metabolism in diverse environments
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
RD1_0839 (gabT)
00650 Butanoate metabolism
RD1_0839 (gabT)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
RD1_0839 (gabT)
00280 Valine, leucine and isoleucine degradation
RD1_0839 (gabT)
00310 Lysine degradation
RD1_0839 (gabT)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
RD1_0839 (gabT)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
rde01007
]
RD1_0839 (gabT)
Enzymes [BR:
rde01000
]
2. Transferases
2.6 Transferring nitrogenous groups
2.6.1 Transaminases
2.6.1.19 4-aminobutyrate---2-oxoglutarate transaminase
RD1_0839 (gabT)
2.6.1.22 (S)-3-amino-2-methylpropionate transaminase
RD1_0839 (gabT)
2.6.1.48 5-aminovalerate transaminase
RD1_0839 (gabT)
Amino acid related enzymes [BR:
rde01007
]
Aminotransferase (transaminase)
Class III
RD1_0839 (gabT)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Aminotran_3
Aminotran_1_2
Motif
Other DBs
NCBI-ProteinID:
ABG30512
RoseoBase:
RD1_0839
UniProt:
Q16BY1
LinkDB
All DBs
Position
816875..818170
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AA seq
431 aa
AA seq
DB search
MSYTADLKTRRENAVATGVGTRGIYAERAQNSELWDVDGKRFIDFAAGIAVNNAGHRHPK
LMEAVAKQCEVFTHTCFHVAPYESYIRLAERLNSLTPGDFKKKTMLVTTGAEAVENAIKM
ARAFTGRSGVIAFSGAFHGRTLLGMALCGKVAPYKKSFGAMPPEIYHAAFPNEYHGITPE
MSLAQLDLLFKSSIDPERVAAIVIEAVQGEGGFNIADFDFLRKLRQIADDHGILLIADEV
QAGMARTGKMFAFEHAGVAADLVTMAKGLAGGFPLSAVTGRAEVVDAPPVGGIGGTYAGN
PLAVAAANAMLDIIEDEGLCANAAKIGATIKDRLTAIAKRQGMEPIGDVRGLGAMIAFEL
VKNRETREPDTALTAAIVTQAEHRGLIILPCGTRGNVIRLLPPLNTSDAIVHEALDVLET
SIEAAMTQIQI
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacactgcagaccttaaaacccgtcgtgaaaacgctgttgctaccggtgtcggc
acgcggggaatctatgccgaacgcgcgcagaattctgagctttgggacgtggatggcaag
cggtttattgattttgcagcgggcatagccgtgaataatgcaggtcaccgccacccgaaa
ttgatggaggccgtggccaagcaatgcgaagtctttacgcatacctgtttccacgtcgcc
ccatatgaaagctacatccgcctggccgaacggctgaacagtctgacccccggtgatttc
aagaaaaagacgatgctggttacgaccggcgccgaagccgtcgagaacgccatcaaaatg
gcccgcgcgtttaccggtcggtcgggcgtcatcgcgttttccggtgcgtttcatggccgg
acccttttggggatggcattgtgcggcaaggtcgccccttacaagaaatccttcggtgca
atgccgcccgaaatctaccatgccgctttcccgaatgaatatcacggcatcacgcccgaa
atgagccttgcccagttggacctgctgttcaagtcgagcattgatcccgagcgcgtggcc
gcgattgttatcgaggcggtacagggtgagggtggtttcaacatcgctgatttcgacttc
ctgcgcaaactgcgccagatcgcggatgatcacggtatcctgctgatcgcggatgaggtg
caggccggtatggcgcggacaggcaagatgtttgcctttgaacatgcaggtgttgcggca
gacctcgtgacgatggccaagggtctcgcgggggggttcccactttcggccgtgaccggt
cgtgccgaggtggtggacgcgccgcccgttggcgggatcggcggcacctatgccggtaat
ccgctcgccgttgcggcggcgaatgccatgctggacatcatcgaagacgagggtctgtgt
gccaatgcggcaaagatcggcgcgaccatcaaggatcggctgacggcaattgccaaacgt
cagggcatggagccgattggcgatgtgcgcggcttgggtgctatgatcgccttcgaacta
gtcaaaaaccgcgaaacccgtgaaccggataccgctttaaccgctgcgattgtaacacag
gccgaacaccgtgggcttatcattttgccatgcgggacccgtggcaatgtcattcgcctg
ctgccgccgctgaatacgtcggatgccatcgtgcacgaagcactcgatgttctggagaca
tccatcgaagccgcgatgacacagatacaaatctga
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