Roseobacter denitrificans: RD1_1246
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Entry
RD1_1246 CDS
T00376
Symbol
lysS
Name
(GenBank) lysyl-tRNA synthetase
KO
K04566
lysyl-tRNA synthetase, class I [EC:
6.1.1.6
]
Organism
rde
Roseobacter denitrificans
Pathway
rde00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
RD1_1246 (lysS)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
rde01007
]
RD1_1246 (lysS)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rde03016
]
RD1_1246 (lysS)
Enzymes [BR:
rde01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.6 lysine---tRNA ligase
RD1_1246 (lysS)
Amino acid related enzymes [BR:
rde01007
]
Aminoacyl-tRNA synthetase
Class I (A)
RD1_1246 (lysS)
Transfer RNA biogenesis [BR:
rde03016
]
Prokaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Multi-aminoacyl-tRNA synthetase complex (MSC)
RD1_1246 (lysS)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_1f
tRNA-synt_1b
tRNA-synt_1g
tRNA-synt_1e
tRNA-synt_1
tRNA-synt_1c
Motif
Other DBs
NCBI-ProteinID:
ABG30893
RoseoBase:
RD1_1246
UniProt:
Q16AV0
LinkDB
All DBs
Position
1208693..1210276
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AA seq
527 aa
AA seq
DB search
MSDTRTAAMTSKAWPFEEARRVLKRYEKNPPEKGYVLFETGYGPSGLPHIGTFGEVARTS
MVMRAFQEISDIPTRLICFSDDLDGMRKVPGNVPNPDALTEHLQRPLTSVPDPFGTHASF
GAHNNAMLRRFLDTFGFEYEFISATEFYNTGQFDEILLRAAAKYDEIMAVMLKSLREERR
QTYSIFLPIHPESGRVMYVPMKEVNAQAGTITFDSEDGEEMTLPVTGGAVKLQWKPDFGA
RWAALGVDFEMYGKDHSTNTPIYDKICRILGQRPPEHFTYELFLDENGQKISKSSGNGVS
IDEWLTYASTESLSYFMYQKPKTAKRMYFDVIPKAVDEYHQQLRAYAGQDTAQRLNNPVW
HIHGGDVPASNMLVPFSMLLNLASVSSAEDKSQLWGFIQRYAPESNPENNPDMDAAADFA
VRYFNDFVKPKKVYRAASDLEREALEDLRDQLKAYDGPVDDEALQSIVYACGRERFDPLR
GWFTALYEVLLGASQGPRFGGFIALYGVQETVALIDAALAGELLSDD
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacacccgtaccgccgcgatgacgagcaaagcatggccctttgaagaggcgcgc
cgcgtgctcaagcgatacgaaaagaacccgccggagaaaggctatgtcctgttcgaaacg
ggctatggcccatcgggcctgccgcatatcggcacctttggcgaggtggcgcgcacctcg
atggtgatgcgggcgtttcaggaaatatcggatattccgaccaggctgatctgcttttcc
gatgatctggacgggatgcgcaaagtgccgggcaatgtgcccaatcccgacgcgctgacc
gagcatttgcagcgcccgctgaccagcgtgccggacccgttcgggacgcatgccagtttt
ggcgcgcataacaacgccatgctgcgccggtttctggacactttcgggttcgagtatgaa
ttcatttccgcgaccgagttctataacaccgggcagtttgatgagattctgctgcgcgcc
gccgcgaaatacgatgaaatcatggctgtgatgctgaaatcgctgcgcgaggagcggcgc
cagacctattcgattttcctgccgatccatcccgaaagcgggcgcgtgatgtatgtcccg
atgaaagaggtcaacgcgcaggcgggcaccatcacctttgacagcgaagatggtgaagag
atgacgctgccggtcaccggtggtgccgtcaaattgcagtggaagccagactttggcgcg
cgttgggcggccctcggcgtggatttcgagatgtatggcaaggaccattccaccaatacg
ccgatctatgacaagatctgccgtatcctgggccagcgcccgccggagcatttcacctat
gagttgtttctggatgaaaacgggcaaaaaatttccaaatcctccggcaatggggtcagc
attgacgaatggctgacctatgccagcaccgagagcctgtcgtatttcatgtaccaaaag
ccgaagacggccaagcgcatgtatttcgacgtgatcccgaaggctgtggacgaataccat
cagcaattgcgcgcctatgccggtcaggacacagcgcagcggttgaacaacccggtgtgg
catatccatgggggcgatgtgccggcgtcgaatatgctggtgccgttttccatgctgctc
aatctggcgagcgtgtcctccgctgaggataaatcgcagctttgggggttcatccagcgc
tatgcgcctgaaagcaatccggaaaacaatccggatatggacgcagcggcagatttcgcc
gtgcggtatttcaacgatttcgtgaagccgaaaaaggtctatcgcgcggccagtgatctg
gagcgtgaggcgctggaggacctgcgcgaccagctcaaggcctatgacgggccggtggat
gatgaggcgttgcagtccatcgtctatgcctgcgggcgcgagcggtttgatcccttgcgc
ggatggttcacggccctttatgaggtgctgctgggcgcgtcgcaggggccgcgttttggt
ggcttcatcgccctttacggggtgcaggaaacggtcgctctgattgatgccgcgcttgcc
ggtgaattgctgagcgacgactga
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