Roseobacter denitrificans: RD1_3013
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Entry
RD1_3013 CDS
T00376
Symbol
pdhB
Name
(GenBank) pyruvate dehydrogenase complex, E1 component, beta subunit
KO
K00162
pyruvate dehydrogenase E1 component subunit beta [EC:
1.2.4.1
]
Organism
rde
Roseobacter denitrificans
Pathway
rde00010
Glycolysis / Gluconeogenesis
rde00020
Citrate cycle (TCA cycle)
rde00620
Pyruvate metabolism
rde00785
Lipoic acid metabolism
rde01100
Metabolic pathways
rde01110
Biosynthesis of secondary metabolites
rde01120
Microbial metabolism in diverse environments
rde01200
Carbon metabolism
rde01210
2-Oxocarboxylic acid metabolism
Module
rde_M00307
Pyruvate oxidation, pyruvate => acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00010 Glycolysis / Gluconeogenesis
RD1_3013 (pdhB)
00020 Citrate cycle (TCA cycle)
RD1_3013 (pdhB)
00620 Pyruvate metabolism
RD1_3013 (pdhB)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
RD1_3013 (pdhB)
Enzymes [BR:
rde01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.4 With a disulfide as acceptor
1.2.4.1 pyruvate dehydrogenase (acetyl-transferring)
RD1_3013 (pdhB)
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GFIT
Motif
Pfam:
Transketolase_C
Transket_pyr
Biotin_lipoyl
Biotin_lipoyl_2
PFOR_II
Motif
Other DBs
NCBI-ProteinID:
ABG32529
RoseoBase:
RD1_3013
UniProt:
Q164R4
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All DBs
Position
2887840..2889219
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AA seq
459 aa
AA seq
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MATEILMPALSPTMEEGTLAKWLVKEGDTVSSGDIMAEIETDKATMEFEAVDEGIIGKIL
IEEGTEGVKVNTAIAILVEEGEDVPQAGADAAEAPMPAALKAEEGKPPATTPTAATPAAP
ETDTTPDWPEGTPLKQQTVREALRDGMSEEMRRDETVFLMGEEVAEYQGAYKISQGMLDE
FGSKRVIDTPITEHGFAGIATGAAFGGLRPIVEFMTFNFAMQAIDHIINSAAKTLYMSGG
QMGAPMVFRGPNGAAARVGAQHSQDYAAWYMQVPGLKVAMPYAASDYKGLMKTAIRDPNP
VIFLENEIVYGRTFDVPDIEDYTVPFGKARIWREGSDVTIVSFGIGMQYALEAAEKLADE
GISAEVVDLRTLRPMDTASIIKSVMKTNRCVTVEEGWPQGSVGSYISSVIMQEAFDYLDA
PVINCTGKDVPMPYAANLEKHALVTTDEVIAAVKQVTYK
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atggctactgaaatactcatgcccgccctatcgcccaccatggaagaaggcacactcgcc
aaatggctggtcaaggaaggagacacggtttcctccggtgacatcatggccgagattgag
accgacaaggcgacgatggaattcgaagccgtcgacgaaggtatcatcggcaagatcctg
atcgaagaaggcaccgaaggcgtgaaagtgaacacagccatcgccattcttgtcgaggaa
ggcgaagatgtgcctcaagccggcgctgacgcagcagaagcccccatgcctgcggcactg
aaggctgaggaaggcaagccacctgccacgacaccaaccgccgccacgccggcagcacct
gaaacggatacaacgcccgactggcccgaaggcacccccctgaaacaacagaccgtgcgc
gaagcgctgcgcgatggcatgtccgaagaaatgcgccgcgacgaaacggtgttcctgatg
ggagaagaggtcgccgaatatcagggggcctacaagatttcccaggggatgctggatgaa
ttcgggtccaaacgcgtgattgatacgccgatcacggaacatggctttgccgggattgcg
accggcgccgcctttggcggtctgcgcccgattgtggaattcatgacattcaacttcgca
atgcaggcaattgaccacatcatcaactccgcagccaaaacgctttacatgtcggggggt
cagatgggcgcgccaatggtcttccgtgggcccaatggtgcggcggcccgtgtaggggcg
caacacagtcaggattacgcggcatggtacatgcaggtgccgggtctgaaggtcgcgatg
ccctatgctgcctctgattacaaggggttgatgaaaactgcgatccgcgatccgaacccg
gtaattttccttgagaatgaaatcgtttacgggcgcacctttgatgtgcctgacatcgag
gattacaccgtgccctttggcaaggcccgcatctggcgcgaagggtccgatgtgaccatc
gtcagctttggtatcggcatgcaatatgcccttgaagccgctgaaaagcttgccgacgaa
ggcatctcggccgaggttgtcgatctgcgtaccctgcgccccatggatacggccagcatc
atcaaatccgtgatgaaaaccaatcgttgcgtgaccgtcgaagaaggatggccgcaaggc
tccgtaggcagctacatcagttcggtgatcatgcaggaggcatttgactatctggatgcg
ccggtcatcaattgcaccggtaaagacgtgccaatgccctatgcggccaatcttgaaaaa
cacgcgctggtcaccaccgatgaagtgatcgctgccgtgaaacaagtcacctacaagtaa
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