Roseobacter denitrificans: RD1_3774
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Entry
RD1_3774 CDS
T00376
Symbol
pcaH
Name
(GenBank) protocatechuate 3,4-dioxygenase, beta subunit
KO
K00449
protocatechuate 3,4-dioxygenase, beta subunit [EC:
1.13.11.3
]
Organism
rde
Roseobacter denitrificans
Pathway
rde00362
Benzoate degradation
rde01100
Metabolic pathways
rde01120
Microbial metabolism in diverse environments
rde01220
Degradation of aromatic compounds
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09100 Metabolism
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
RD1_3774 (pcaH)
00624 Polycyclic aromatic hydrocarbon degradation
RD1_3774 (pcaH)
Enzymes [BR:
rde01000
]
1. Oxidoreductases
1.13 Acting on single donors with incorporation of molecular oxygen (oxygenases)
1.13.11 With incorporation of two atoms of oxygen
1.13.11.3 protocatechuate 3,4-dioxygenase
RD1_3774 (pcaH)
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Gene cluster
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Motif
Pfam:
Dioxygenase_C
PCDO_beta_N
CarboxypepD_reg
DUF4964
Motif
Other DBs
NCBI-ProteinID:
ABG33242
RoseoBase:
RD1_3774
UniProt:
Q161V1
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All DBs
Position
3655981..3656703
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AA seq
240 aa
AA seq
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MSNRALSPRNWQVHPPALAPAYKTSRLRAPAQALIAMDPTTSELSGPTFGPAQIAASDSD
LLQNHKTTGLPIGERIIVHGRVLDEQARPVPHTLVEIWQANASGRYRHVNDSYFAPLDPN
FGGCGRTLTDQDGAFRFHTIKPGAYPWPNGPNSWRPAHIHFSVFGTAFAQRLITQMYFEG
DPLLDLCPIYQAIPDPHAKARLVAPLDMETSEPFDSIAYRFDIVLRGACSTPFENRPEGN
NT seq
723 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaccgcgcgctgtccccccgaaactggcaggtgcatccgcccgcccttgcgccg
gcctataaaaccagccggttgcgcgcacctgcgcaggccctcatcgcgatggacccgacc
acaagcgagctgtcaggccccacattcggcccggcgcagatcgcggcgagcgacagtgat
ctgctgcaaaaccacaagaccacaggcctcccgatcggcgagcgcatcatcgtgcatggg
cgcgtgctggatgaacaggcgcgacccgtcccgcatacgctggtcgaaatctggcaggcc
aatgccagcgggcgctatcgtcatgtgaacgacagctatttcgcgccgcttgatccgaat
tttggcggttgtggcagaaccctcaccgatcaggacggtgcctttcggtttcacacgatc
aaaccgggtgcctacccttggccaaacggtcccaatagctggcggcctgcgcatatccat
ttctcggtctttggcaccgcattcgcgcaacgcctgatcacgcagatgtattttgaaggc
gacccgctgctggacctgtgtccgatctatcaggcgatccccgaccctcatgcgaaggca
cgtctggttgccccgctggacatggagacgagcgaaccctttgacagtatcgcctaccgc
tttgacatcgtcctgcgtggggcatgttccaccccctttgaaaaccgacccgaggggaat
tga
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