Roseobacter denitrificans: RD1_3935
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Entry
RD1_3935 CDS
T00376
Symbol
pcaB
Name
(GenBank) 3-carboxy-cis,cis-muconate cycloisomerase, putative
KO
K01857
3-carboxy-cis,cis-muconate cycloisomerase [EC:
5.5.1.2
]
Organism
rde
Roseobacter denitrificans
Pathway
rde00362
Benzoate degradation
rde01100
Metabolic pathways
rde01120
Microbial metabolism in diverse environments
rde01220
Degradation of aromatic compounds
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09100 Metabolism
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
RD1_3935 (pcaB)
Enzymes [BR:
rde01000
]
5. Isomerases
5.5 Intramolecular lyases
5.5.1 Intramolecular lyases (only sub-subclass identified to date)
5.5.1.2 3-carboxy-cis,cis-muconate cycloisomerase
RD1_3935 (pcaB)
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Motif
Pfam:
Lyase_1
Motif
Other DBs
NCBI-ProteinID:
ABG33391
RoseoBase:
RD1_3935
UniProt:
Q161F2
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All DBs
Position
3796060..3797391
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AA seq
443 aa
AA seq
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MAASVFDSPLYSKLFPVGETGRLFSDSAAIRAMLLVEGALAKAQGKLGIIPETSAAAIHR
ATLEIQIDPGALATSTGQNGVCVPGLVDAFRAEMNAPEHAQFVHWGATSQDIIDTALMLR
LRQALALAESDLSELLSRLAAAAEEHATTPMAARTYGQVATPTTWGAVVAQWGMPLADAL
DALPHLRQSSLFVSLSGASGTSAALGAQAPDLRRALAAGLGLQDPERSWHTDRTPLLRIS
DWLGHVATILGSMGSSLNGLAASGIDEVAFDRRGASSTMPQKQNPIAATGLVALSNQSCA
LRAGMTSAAQHRHQRDGTAWFSEWMLLPQIVLTTASALQIATGLAGEVQPNVAQMQAGLE
TGNGLIHAEALSFALSQDMPRPQAQAATKALCAQAVAEGASLPDLARAAYPHLPQTLFQA
GHQLGQAPEEARAFAARIMSMAK
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atggccgcaagcgtttttgacagcccgctttacagcaaactctttccggtcggtgagacg
ggccggctgttttcagactccgccgcgatccgtgcaatgctgctggtggaaggcgcattg
gccaaggcgcagggcaaattgggcatcatccccgaaacaagcgccgccgccattcaccgc
gccacccttgaaattcagatcgaccccggcgcgctggccacatccacagggcagaacggc
gtctgcgtccccggtctggtggacgcctttcgcgccgagatgaacgcacccgaacatgcg
caattcgttcattggggggccacatcgcaggacatcatcgacacagcactgatgctgcgg
ctgcgtcaggccctcgcgctggccgaaagtgacctcagcgagttgttgtcgcgtctggcc
gctgcggcagaagaacatgcaacaacccccatggccgcgcgcacatatgggcaggttgcg
acaccgacaacatggggcgcggttgtggcgcaatggggcatgcccctcgcggatgcgctg
gatgctttgccgcatctgcgtcaatcgagtctcttcgtctcgctctcaggcgcgtccggg
acatccgccgcactgggcgcacaggcccctgatctgcgccgcgcgctggcggcggggctg
gggctgcaggatcctgaaaggtcgtggcacacagaccgcacgcccctgttgcggatcagc
gattggctgggacatgtggcaaccatacttggcagtatgggcagcagcctgaacgggctt
gccgccagcgggattgacgaggtcgcgtttgacagacgcggggcttcctccaccatgccg
caaaagcaaaacccgattgcggccactgggcttgtggcgctttccaaccaatcatgcgct
ttgcgcgctggcatgacatccgccgcgcagcaccggcaccaacgcgacggcaccgcatgg
ttcagcgaatggatgctcttgccacagatcgtcctgacgaccgcatcagcgttgcagatc
gccaccgggctggcgggcgaagtgcagccaaacgtagcacagatgcaggcggggttggaa
accggcaacgggctgatccacgccgaagcgctgagtttcgcgcttagccaggacatgccg
aggccgcaggcacaggcggcgaccaaagcgctctgtgcccaagcagtggctgaaggcgcg
tccctgcccgatcttgcacgcgcggcctacccccacctgccgcagaccttatttcaggcc
gggcatcagcttggtcaggccccggaagaggcgcgggcctttgccgcgcgcatcatgagc
atggccaagtga
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