Rhodanobacter denitrificans: R2APBS1_1587
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Entry
R2APBS1_1587 CDS
T02495
Name
(GenBank) glycine dehydrogenase, decarboxylating
KO
K00281
glycine cleavage system P protein (glycine dehydrogenase) [EC:
1.4.4.2
]
Organism
rhd
Rhodanobacter denitrificans
Pathway
rhd00260
Glycine, serine and threonine metabolism
rhd00630
Glyoxylate and dicarboxylate metabolism
rhd00785
Lipoic acid metabolism
rhd01100
Metabolic pathways
rhd01110
Biosynthesis of secondary metabolites
rhd01200
Carbon metabolism
Module
rhd_M00621
Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:
rhd00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
R2APBS1_1587
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
R2APBS1_1587
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
R2APBS1_1587
Enzymes [BR:
rhd01000
]
1. Oxidoreductases
1.4 Acting on the CH-NH2 group of donors
1.4.4 With a disulfide as acceptor
1.4.4.2 glycine dehydrogenase (aminomethyl-transferring)
R2APBS1_1587
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Gene cluster
GFIT
Motif
Pfam:
GDC-P
GcvP2_C
Aminotran_5
Beta_elim_lyase
Motif
Other DBs
NCBI-ProteinID:
AGG88729
UniProt:
M4NDD6
LinkDB
All DBs
Position
complement(1740928..1743795)
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AA seq
955 aa
AA seq
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MSHNPTPSLRDLEHHGAFIERHIGPDDAEIAQMLRVIGHDSLESMTDAIVPGTIKSAAPL
ALPEAITEEDALAKIRAIADKNKVFRSFIGQGYYGTHTPNVILRNILENPAWYTAYTPYQ
AEISQGRMEALINFQTMCADLTGMEIANASLLDEATAAAEAMTLAKRSCKSKSNVFFVSS
GVHPQTLEVVRTRAEPLGIELVVGADSDAAGTEAFGVLLQYPNTFGSINDYQAIADAVHA
RGGLVAVATDLLALTLIAAPGEWGADIVVGNSQRFGVPFGFGGPHAAFMACRDAYKRSMP
GRLIGVSIDTEGKAAYRLTLQTREQHIRREKATSNICTAQVLLAVMASMYAVYHGPSGLT
RIARRTHRLAAILTVALRRAGVKVGGDFFDTLHVTGIDAATVHAKAHAAGINLRELGADS
LGISLDETTTRADVVALAGLFGAELDIDALDAEVHDALPRTLLRKSAFLTHPVFNTHHSE
HELLRYMRALADKDLAMDRTMIPLGSCTMKLNATAEMIPITWPEFADIHPLAPATQAQGY
KELIDGLEAMLVECTGYDAVSLQPNSGAQGEYAGLLAIRAYHRSRGDAHRDICLIPESAH
GTNPASAHLCGMSVVVTKCDANGNVDVEDIRRAAEKHSDRLAALMITYPSTHGVFEEDIV
AICEIVHAHGGQVYTDGANMNALVGVAKPGKWGSDVSHLNLHKTFCIPHGGGGPGVGPCA
VKSHLTPFLPKKLGEGRAAGMVSAATFGSASILPISWMYIAMMGQQGLRKATQVALLNAN
YIAKRLAAHYPTLYTGRNGLVAHECILDLRPLKDATGIGAEDVAKRLIDFGFHAPTLSFP
VSGTLMVEPTESESQVELDRFIDAMIQIHDEIRAIEEGKLDREDNPLKNAPHTATMVSAS
EWTHAYPRELAAFPLASLKLQKYWPPVARVDNVYGDKHIQCACIPVDAYKEEAEA
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atgagccacaaccccactccttccctgcgcgacctcgaacaccacggcgcgttcatcgag
cgccacatcggtccggacgacgccgagatcgcgcagatgctgcgcgtgatcggccacgat
tcgctggagtcgatgaccgacgcgatcgtccccggcacgatcaagtccgccgccccgctg
gcgttgccggaggcgatcaccgaagaggacgcgctggcaaaaatccgcgcgattgcggac
aagaacaaagtgttccgcagcttcatcggccagggctactacggcacccacacgccgaac
gtcatcctgcgcaacatcctggaaaacccggcctggtacaccgcctacacgccgtaccag
gcggagatctcgcagggccgcatggaggcgctgatcaacttccagaccatgtgcgccgac
ctcaccgggatggagatcgccaacgcctcgctgctggacgaagccaccgccgcggccgag
gcgatgaccctggccaagcgctcgtgcaagtcgaagtcgaacgtgttcttcgtgtccagc
ggcgtgcacccgcagacgctggaagtggtgcgcacgcgcgccgagccgctgggcatcgaa
ctggtggtcggcgcggacagcgatgcggccggcaccgaggcgttcggcgtgctgctgcag
tacccgaacaccttcggcagcatcaacgattaccaggcgatcgccgatgccgtgcacgca
cgcggcggcctggtcgcggtggccaccgatctgctcgcgctgaccctgatcgccgccccc
ggcgaatggggcgcggacatcgtggtcggcaactcgcagcgcttcggcgtgccgttcggc
ttcggcggcccgcacgccgccttcatggcctgccgcgacgcgtacaagcgctcgatgccg
gggcgcctgatcggcgtgtcgatcgacaccgaaggcaaggctgcctaccgcctcaccctg
cagacgcgcgagcagcacatccgccgcgagaaggccacctccaacatctgcaccgcgcag
gtgctgctggcggtgatggcgagcatgtacgcggtctaccacggccccagcgggctcacc
cgcatcgcccgccgcacgcatcgcctggccgcgatcctgaccgtcgcgctgcgtcgggcc
ggcgtgaaggtgggcggcgatttcttcgacacgctgcacgtcaccggtatcgatgccgcc
acggtccatgccaaggcccacgcggccggcatcaacctgcgcgaactgggcgccgacagc
ctcggcatcagcctggacgagaccaccacccgcgccgacgtcgtcgcactggcgggcttg
ttcggtgccgagctcgacatcgacgcgctcgatgccgaagtccacgacgcgctgccacgc
acgctgctgcgcaagagcgccttcctcacccacccggtgttcaacacgcaccacagcgag
cacgaactgctgcgttacatgcgcgcgctggccgacaaggacctggcgatggatcgcacg
atgatcccgctgggcagctgcaccatgaagctcaatgccaccgccgagatgatcccgatc
acctggccggaattcgccgacatccatccgctggcgccggccacgcaggcgcagggctac
aaggaactgatcgacggcctggaagcgatgctggtcgaatgtaccggctacgacgcggtg
agcctgcagccgaactccggcgcgcagggcgagtacgccggcctgctggcgatccgcgcg
tatcaccgctcgcgcggcgacgcgcaccgcgacatctgcctgatccccgaatccgcccac
ggcaccaacccggcctccgcccacctgtgcggcatgagcgtggtggtgaccaagtgcgac
gccaacggcaacgtcgacgtagaggacatccgccgcgccgcggagaagcattccgaccgc
ctcgccgcgctgatgatcacctacccgtccacgcatggcgtgttcgaggaagacatcgtg
gcgatctgcgagatcgtgcacgcgcacggcggtcaggtgtacaccgacggcgccaacatg
aacgcgctggtcggcgtggccaagcccggcaagtggggctcggacgtgtcgcacctcaac
ttgcacaagaccttctgcatcccgcacggcggcggcggccccggtgtcggcccgtgcgcg
gtgaagtcgcaccttaccccgttcctgccgaagaagctcggcgagggccgcgccgcaggc
atggtcagcgccgccacgttcggcagcgccagcatcctgccgatcagctggatgtacatc
gccatgatgggccagcagggcctgcgcaaggccacccaggtcgccttgctcaacgccaac
tacatcgccaagcggctggcggcgcactaccccacgctgtacaccggccgcaacgggctg
gtggcgcacgagtgcatcctcgacctgcgcccgctcaaggacgccaccggcatcggcgcc
gaggacgtagccaaacggctgatcgacttcggcttccacgcacccacgctgagcttcccg
gtgtccggcaccttgatggtggaaccgaccgaaagcgagtcgcaagtcgagctggaccgc
ttcatcgacgcgatgatccagatccacgacgagatccgtgcgatcgaggaaggcaagctg
gaccgcgaggacaacccactgaagaacgccccgcataccgccaccatggtcagcgccagc
gagtggacccacgcctacccgcgcgaactggccgccttcccgctggccagcctgaagctg
cagaagtactggccgccggtggcccgcgtcgacaacgtctacggcgacaagcacatccag
tgcgcgtgcatcccggtggatgcgtacaaggaagaagccgaggcatag
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