Rhizobium sp. Kim5: Kim5_CH00170
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Entry
Kim5_CH00170 CDS
T05501
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
rhk
Rhizobium sp. Kim5
Pathway
rhk03030
DNA replication
rhk03410
Base excision repair
rhk03420
Nucleotide excision repair
rhk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Kim5_CH00170 (polA)
03410 Base excision repair
Kim5_CH00170 (polA)
03420 Nucleotide excision repair
Kim5_CH00170 (polA)
03440 Homologous recombination
Kim5_CH00170 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhk03032
]
Kim5_CH00170 (polA)
03400 DNA repair and recombination proteins [BR:
rhk03400
]
Kim5_CH00170 (polA)
Enzymes [BR:
rhk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Kim5_CH00170 (polA)
DNA replication proteins [BR:
rhk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Kim5_CH00170 (polA)
DNA repair and recombination proteins [BR:
rhk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Kim5_CH00170 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Kim5_CH00170 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
HHH_5
HHH_2
IMS_HHH
HHH
Transposase_20
Motif
Other DBs
NCBI-ProteinID:
ARQ56293
LinkDB
All DBs
Position
177421..180414
Genome browser
AA seq
997 aa
AA seq
DB search
MKKGDHLFLVDGSGFIFRAFHALPPLTRKSDGLPVGAVSGFCNMLWKLLRDARNTDVGVT
PTHLAVIFDYSAKTFRKDLYDAYKANRSAPPEELIPQFGLIREATRAFNLPCIETEGFEA
DDIIATYARQAEAAGADVTIVSSDKDLMQLVTANVHMYDSMKDKQIGIPDVVEKWGVSPE
KMIDLQAMTGDSVDNVPGIPGIGPKTAAQLLEEYGDLDTLLERATEIKQVKRRETILANI
EMARLSRELVRLRTDVPLDLDLDALVLEPQNGPKLIGFLKTMEFTSLTRRVAEVCDCDAS
AIEPAVVPIEWGAAARGPDLDAAEPEPVAGGIPDVSGQSVSVPARAKAGVEGTFSPADLA
KARAEAFATLPFDHSTYETIRDLAALDRWIADARDTGLVAFDTETTSLDAMQAELVGFAM
AIADNVADPTGTKIRAAYVPLAHKNGVGDLLGGGLAENQIPMRDALPRLKALLEDESVLK
VAQNLKYDYLLLKRYGIETKSFDDTMLISYVLDAGTGAHGMDPLSEKFLGHTPIPYKDVA
GSGKANVTFDLVDIDRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLA
RMEARGVTVDRQILSRLSGELAQGAARLEDEIYTLAGERFNIGSPKQLGDILFGKMGLAG
GSKTKTGQWSTSASVLEDLAAAGFELPRKIVDWRQLTKLKSTYTDALPGYVHPETKRVHT
SYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRVLAHV
AEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLANQL
SIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGRRINYPEIRSSNPSVRA
FNERAAINAPIQGSAADVIRRAMIKMEPALVEAGLAERVRMLLQVHDELIFEVEDEDVDK
AMPIIVSVMENATMPALEMRVPLRVDARAATNWDEAH
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaggcgatcacctcttcctagtcgatggttccggtttcatcttccgggcgttt
catgcattaccgccgctgacgcgcaaatcggacggcctgccggtgggcgccgtttccggt
ttctgcaacatgctgtggaagctcttgcgggatgcgcgcaacaccgatgtcggggtaaca
ccgacccatctcgccgtcatcttcgattattccgccaagacctttcgcaaggatctctac
gacgcttacaaggcgaaccgttcggccccgcccgaagagctcatcccgcaattcggcctc
atccgcgaggcgacccgcgccttcaacctgccctgcatcgagaccgaaggcttcgaggct
gacgacatcatcgccacctatgcccgccaggccgaggcggcaggcgccgacgtcacgatc
gtttcctccgacaaggatctgatgcagctcgtcacagcaaatgtccacatgtatgacagc
atgaaggacaagcagataggcattcccgacgtcgtcgagaaatggggcgtgtcgccggaa
aagatgatcgacctgcaggcgatgaccggcgattccgtcgacaatgtgcccggcattccc
ggcatcggcccgaaaaccgccgcccagctgcttgaggaatacggcgatctcgacacgctg
ctcgaacgcgccaccgagatcaagcaggtcaagcgccgcgagacgatcctggccaatatc
gagatggccaggctctcgcgcgaactcgtgcggctgcgcaccgacgtgccgctcgatctc
gatctcgacgcgctggtactggagccgcagaacggtccgaagctgatcggctttctcaag
acgatggaattcacttcgttgacgcgccgcgtcgccgaagtctgtgattgcgatgcgagc
gccatcgaaccggcggtcgttcctatcgaatggggcgcggctgcccgtggtcccgatctc
gatgcggccgagccggagccggttgccggcggcattcccgacgtctcagggcaatccgtg
tccgtgccggcgcgtgcgaaggctggcgtcgaaggtaccttttcgcctgccgatcttgcc
aaggcgcgggctgaagcgtttgccacgctgccctttgaccattcgacctatgaaacgatc
cgcgatctggcggcactcgaccgatggatcgccgatgcgcgcgacaccggcctcgtcgct
ttcgataccgagaccacgtcactggatgcgatgcaggcggagcttgtcggatttgcgatg
gcgatcgccgacaatgtcgccgatcccaccggcacgaagatccgcgccgcctatgtgccg
cttgcccacaaaaatggtgtcggtgatctgctcggcggcggccttgccgaaaaccagatc
ccgatgcgcgatgctctgccgcgcctgaaggcattacttgaagacgaatcggttctgaag
gtcgcccagaacctgaaatacgactatctgctgttgaagcgctacggcatcgagacgaag
agtttcgacgacacgatgctgatttcctacgtgctcgacgccggcaccggcgctcatggc
atggatccgctttcggaaaaattcctcggtcacacgcctatcccctacaaggacgtggcg
ggcagcggcaaggcgaacgtcaccttcgatctggtcgatatcgaccgcgccacccattac
gccgccgaagacgccgatgtgacgctgcgcctctggctggtgctgaagccgcggctggcg
gcggcagggctgaccagcgtctatgaacggctggagcggccgctgttgcccgtgctcgcc
cgcatggaagcgcgcggcgtcaccgtagaccggcagatcctgtcgcgcctgtccggcgaa
ctggcccagggtgcggcgcggctggaggacgaaatctatacgctggccggcgagcgtttc
aatatcggttcgccgaagcagctgggcgatattctgttcggcaagatgggtcttgccggc
ggcagcaagacgaagaccgggcaatggtcgacctccgcctcggtgctcgaggatctcgcc
gccgccgggttcgaactgccgcgcaagatcgtcgactggcgtcagctcaccaagctgaaa
tcgacctataccgacgcgcttccaggctatgtgcatccggagaccaagcgggtccacacc
tcctactcgctggcatcgacgacgacagggcggctgtcttcctccgagccgaacctgcag
aatattccggtgcgcaccgctgaaggccgcaagatccgcaccgccttcatctcgacaccg
ggccacaagctgatttccgccgattacagccagatcgaactgcgtgtgcttgcccatgtg
gccgagatcccgcagctgaccaaggccttcgaggatggcgtcgacatccatgccatgacc
gcgtcggaaatgttcggggtgccggtcgaaggcatgccgggcgaagttcgccgccgcgcc
aaggcgatcaatttcggcatcatctacggcatctcggccttcgggctcgccaatcagctt
tcgatcgagcggtcggaagccggcgactatatcaagaaatatttcgagcgtttccccggc
atccgcgattatatggaaagccgcaaggccatggcgcgcgacaagggttacgtcgagacg
attttcggccggcgaatcaactatcccgaaatccgttcttccaatccgtcggtgcgcgcc
ttcaacgagcgggccgcgatcaacgcgccgatccagggctcggccgccgacgtcatccgc
cgggcgatgatcaagatggagccggcgcttgttgaagccggtcttgccgagcgtgtccgc
atgctcctgcaggtgcacgacgaactcatcttcgaagtcgaagatgaggatgtcgacaag
gccatgccgatcatcgtctcggtcatggaaaacgccaccatgccggcgctcgaaatgcgc
gtgccgctgcgcgtcgatgcgcgcgccgccaccaattgggatgaggcgcattaa
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