Rhizobium sp. Kim5: Kim5_PB00064
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Entry
Kim5_PB00064 CDS
T05501
Symbol
pcaH
Name
(GenBank) protocatechuate 3,4-dioxygenase beta subunit
KO
K00449
protocatechuate 3,4-dioxygenase, beta subunit [EC:
1.13.11.3
]
Organism
rhk
Rhizobium sp. Kim5
Pathway
rhk00362
Benzoate degradation
rhk01100
Metabolic pathways
rhk01120
Microbial metabolism in diverse environments
rhk01220
Degradation of aromatic compounds
Brite
KEGG Orthology (KO) [BR:
rhk00001
]
09100 Metabolism
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
Kim5_PB00064 (pcaH)
00624 Polycyclic aromatic hydrocarbon degradation
Kim5_PB00064 (pcaH)
Enzymes [BR:
rhk01000
]
1. Oxidoreductases
1.13 Acting on single donors with incorporation of molecular oxygen (oxygenases)
1.13.11 With incorporation of two atoms of oxygen
1.13.11.3 protocatechuate 3,4-dioxygenase
Kim5_PB00064 (pcaH)
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Motif
Pfam:
Dioxygenase_C
PCDO_beta_N
CarboxypepD_reg
DUF4198
SdrD_B
Motif
Other DBs
NCBI-ProteinID:
ARQ61028
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Position
pRetKim5b:complement(76048..76797)
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AA seq
249 aa
AA seq
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MSELVNRKPETGAFFARDRAWHAPALTPGYKTSVLRAPQRALLSLDGTISETTGPVFGHS
MIGELDNDLILNYARPGESAIGERIIVHGRVLDERAKPVAGALVEFWQANAGGRYRHKKE
SYLAAIDPNFGGCGRAITDEEGRYHFRTVRPGAYPWPNGVNDWRPAHIHFSIFGHGFAQR
LITQMYFEGDPMIWKCPIVGTIPDKAAIEQLIAPLDWGNTIPMDSRAYKFDIVLRGRRST
MFENKLEGN
NT seq
750 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaattggtcaatcgcaagccggagaccggcgccttcttcgcccgcgaccgcgcc
tggcatgcgccggcgctgacgcccggctacaagacgtcggtgctgcgggcgccgcagcgc
gccctgctgtcgctcgacggcacgatctccgaaacgacaggtccggtcttcggccattcg
atgatcggcgagctcgacaacgacctgatcctgaattatgcgcggcccggcgaaagcgcc
atcggcgaacgcattatcgtccacggccgcgtgctcgacgagcgcgcaaagccggtggcc
ggcgccctcgtcgagttctggcaggccaatgccggcgggcgctatcgccacaagaaggaa
agctatctggcggcgatcgacccgaatttcggcggctgcggccgcgccatcaccgatgag
gaaggccgctatcatttccgcacggtgcggcccggcgcctatccctggccgaacggcgtc
aacgactggcgtcccgcccatatccatttctcgatcttcggccacggttttgcccagcgg
ctgatcacccagatgtatttcgagggcgatccgatgatctggaaatgtccgatcgtcggc
accatcccggacaaggcggcgatcgagcagttgatcgcgccgctcgactggggcaacacg
atcccgatggattcacgtgcttataaattcgatatcgtgctgcgcggccgccgctcgacg
atgttcgaaaacaagctggagggcaattga
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