Roseovarius indicus: RIdsm_05087
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Entry
RIdsm_05087 CDS
T06222
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
rid
Roseovarius indicus
Pathway
rid03030
DNA replication
rid03410
Base excision repair
rid03420
Nucleotide excision repair
rid03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rid00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RIdsm_05087 (polA)
03410 Base excision repair
RIdsm_05087 (polA)
03420 Nucleotide excision repair
RIdsm_05087 (polA)
03440 Homologous recombination
RIdsm_05087 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rid03032
]
RIdsm_05087 (polA)
03400 DNA repair and recombination proteins [BR:
rid03400
]
RIdsm_05087 (polA)
Enzymes [BR:
rid01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RIdsm_05087 (polA)
DNA replication proteins [BR:
rid03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RIdsm_05087 (polA)
DNA repair and recombination proteins [BR:
rid03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
RIdsm_05087 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RIdsm_05087 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
Taq-exonuc
HHH_5
DDE_Tnp_IS66
Motif
Other DBs
NCBI-ProteinID:
QEW29244
UniProt:
A0A0T5PE47
LinkDB
All DBs
Position
5220465..5223266
Genome browser
AA seq
933 aa
AA seq
DB search
MTFGKGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVSGFCNMLFRYVSDDHGADAP
THVAVIFDKGSHTFRNDMYDLYKANRDEMPEDLRPQIPLTRDATRAFNIACEEMEGYEAD
DIIATLACQARDLGGRVTIVSSDKDLMQLVGDGVEMLDAMKNRRIDVEGVEEKFGVKPDR
VVDVQALAGDSVDNVPGAPGIGIKTAALLINEFGSLEELLDRAEEIKQPKRRETLIEKRE
QIELSKKLVQLDCNTPLEFTLDDLEIKEPDPDTLLSFLTEMEFRTLTKRIADTLHVEAPV
IPDTNPAGANPAEEAPDWPAIDPSAYEHVQTMEALQVWIDRITARGYVAIDTETTSLNEM
QAALVGISLAVTPGEACYIPLRHTEGGSDDLFSSESRAEGQLDPETVLTALKPILEDDAI
LKIGQNMKYDAKIFAQNGVRIAPIDDTMLMSYALNSGIHNHGMDTLSERYLSHQPIPIKE
LLGTGKSAITFDKVAIDKAVGYAAEDADITLRLWHIFKPQLHTARVTTVYETLERPLVPV
LAQMERHGIQVDRDTLSRMSGKFAQKMAQLEDEIHTLAGRKFNVGSPKQLGEILFDEMSL
EGGKKGKTGAYATGADVLEDLATEHELPARILDWRQLSKLKSTYTDALQDHIDPDTGRVH
TSYVQTGASTGRLASTDPNLQNIPVRTEEGRRIREAFVAPEGQTLLSLDYSQIELRILAH
IADIKQLKQAFADGLDIHAMTASEMFDVPLDEMTPEIRRRAKAINFGVIYGISGFGLARQ
LRIPRGDAQDFINRYFERFPGIKTYMDDTVAFAKEHGFVQTLFGRKIHTPEISAKGPRAG
FARRAAINAPIQGTAADIIRRAMIRMPAAIEGLPCKMLLQVHDELLFEVESGAADKVITA
ARDVMEGAAKPAVHLDVPLVVDAGQGANWAEAH
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgacattcggcaaaggctgccacctgcacctgatcgacggctcggccttcattttccgc
gcctaccacgccctgccgccgctcacccgcaaatccgacgggctgcccatcggcgcggtc
tcgggcttctgcaacatgctcttccgctacgtctccgacgatcacggcgccgatgcgccc
acccatgtcgcggtgatcttcgacaagggctcgcacaccttccgcaacgacatgtatgac
ctctacaaggccaaccgcgacgagatgccagaggatctgcgcccgcagattccgctcacc
cgcgacgccacccgcgccttcaacatcgcctgcgaggagatggaaggctacgaggccgac
gacatcatcgccaccctcgcctgccaggcgcgcgacctgggcgggcgggtcaccatcgtc
tcctccgacaaggacctgatgcaactcgtgggcgacggggtcgagatgctcgacgccatg
aagaaccgccgcatcgacgtggaaggggtggaggaaaagttcggcgtcaagcccgaccgc
gtggtcgacgtgcaggcgctggccggcgacagcgtcgacaacgtgccgggcgcccccggc
atcggcatcaagaccgccgctttgctcatcaacgagttcggctcgctcgaagagctgctc
gaccgcgccgaggaaatcaagcagcccaagcgccgcgagaccctgatcgagaagcgcgaa
cagatcgagctgtcgaagaagctcgtccagctcgactgcaacacgcctttggaattcacc
ctcgacgatctcgagatcaaggagcccgaccccgacacgctcctgtctttcctcaccgag
atggagttccgcaccctcaccaagcgcatcgccgatacgctgcatgtcgaggccccggtc
atcccagacaccaaccccgccggcgccaacccggccgaggaggcccccgactggcccgcc
atcgacccgtcagcctacgagcacgtccagacgatggaggcgctgcaggtctggatcgac
cgcatcaccgcccgcggctatgtcgccatcgacaccgagaccacttcgctcaacgaaatg
caggcggcgctcgtcggcatctccctcgccgtcaccccgggcgaggcctgctacatcccc
ctgcgccataccgagggcggctcggacgacctcttcagctccgaatcccgcgccgagggc
cagctcgaccccgaaaccgtcctgaccgccctcaagccgatcctcgaggatgacgccatc
ctcaagatcggccagaacatgaagtacgacgccaagatcttcgcccagaacggcgtgcgc
atcgcccccatcgacgacacgatgctgatgtcctacgcgctcaattccggcatccacaat
cacgggatggacacgctctccgaacgctacctctcgcatcagccgatccccatcaaggaa
ctgctcggcaccggcaaatccgccatcaccttcgacaaggtcgccatcgacaaggccgtg
ggctacgccgccgaggatgccgatatcaccctgcgcctctggcacatcttcaagccgcag
ctgcacaccgcccgcgtcaccaccgtctacgaaaccctcgaacggcccctcgtgccggtg
ctcgcccagatggaacgccacggcatccaggtcgaccgcgacacgctctcgcgcatgtcc
ggcaagttcgcccagaagatggcccagctggaagacgaaatccacacgctggccggccgc
aagttcaacgtcggctcccccaagcaactcggcgaaatcctcttcgacgaaatgtcattg
gaaggcggcaagaagggcaagaccggcgcctatgccaccggcgccgacgtgctcgaagac
ctcgcgacagagcacgaactgcccgcccgcatcctcgactggcgccagctctccaagctg
aaatccacctataccgacgccctgcaggatcacatcgaccccgacacaggccgcgtccac
acctcctacgtccagaccggcgccagcaccggccgcctcgcctcgaccgacccgaacctg
cagaacatccccgtccgcaccgaggaaggccgccgcatccgcgaggccttcgtcgccccc
gagggccagacgctcctctccctcgactactcccagatcgagctgcgcatcctcgcccat
atcgccgatatcaaacagctcaaacaggccttcgccgacgggctcgacattcacgccatg
accgcctcggaaatgttcgacgtgcccctcgacgaaatgaccccggaaatccgccgccgc
gccaaggcaatcaatttcggcgtgatctacggcatttccggcttcggcctcgcccgccag
ctccgcatcccccgcggcgacgcgcaggacttcatcaaccgctatttcgagcgcttcccg
ggcatcaagacctacatggacgacacggtggcgttcgcgaaagagcacggcttcgtgcaa
accctcttcggccgcaaaatccacacgccggaaatttccgccaagggcccccgcgccggc
ttcgcccgccgcgccgccatcaacgcgcccattcagggcaccgccgccgacatcatccgc
cgcgccatgatccgcatgcccgcggcgatcgaggggctgccctgcaagatgctcctgcag
gtccacgacgaactgctcttcgaggtcgaatccggcgccgccgacaaggtcatcaccgcc
gcccgagacgtcatggaaggcgccgcaaaacccgccgtccacctcgacgtgcccctcgtc
gtcgacgccggccagggcgccaactgggccgaggcccactga
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