Rhinichthys klamathensis goyatoka (western speckled dace): 130075259
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Entry
130075259 CDS
T09701
Symbol
pold1
Name
(RefSeq) DNA polymerase delta catalytic subunit
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03030
DNA replication
rkg03410
Base excision repair
rkg03420
Nucleotide excision repair
rkg03430
Mismatch repair
rkg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
130075259 (pold1)
03410 Base excision repair
130075259 (pold1)
03420 Nucleotide excision repair
130075259 (pold1)
03430 Mismatch repair
130075259 (pold1)
03440 Homologous recombination
130075259 (pold1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rkg03032
]
130075259 (pold1)
03400 DNA repair and recombination proteins [BR:
rkg03400
]
130075259 (pold1)
Enzymes [BR:
rkg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
130075259 (pold1)
DNA replication proteins [BR:
rkg03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
130075259 (pold1)
DNA repair and recombination proteins [BR:
rkg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
130075259 (pold1)
MMR (mismatch excision repair)
DNA polymerase delta complex
130075259 (pold1)
BRITE hierarchy
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
DNA_pol_B_2
Motif
Other DBs
NCBI-GeneID:
130075259
NCBI-ProteinID:
XP_056095811
LinkDB
All DBs
Position
Unknown
AA seq
1170 aa
AA seq
DB search
MKANHFLLFDQLQSSVDLRNFTGKTKTDVAHVRWKLTFNTVKWREIYLVHIWSNRARAAI
KGCFRMDFKRRNGGPGMGGASQAKKGKISTEWEDSPSQFEEELALFDEMEMEVESGEGQA
GHDVIPVGELFSADLNPRWKRPHAPPLQPNSDTLIFQQIDLDYYLGSAVAGMPGQVQGKV
PIVRMFGVTDSGNSVCCHIHGFAPYFYVPAPNGFTNAHLAEFQRELNSAVLKDMRSNKDN
MAVTVLALDITTKESMYHYHGNRPQDFLRITMAMPRLVAPAKRILEQGFKFANFATQSYQ
AFEANIDFEIRFMVDSDVVGCCWIELPKGKYRVREERSEGQTDSKYPGKVSLCQYEVDVA
WNDLVSHPAEGEWQRIAPLRVLSFDIECAGRKGVFPEPEIDPVIQIASMVQRQGEKEPFI
RTVFTLQSCSSIVGSQILCFTQERQLLQSWGEFMRTVDPDIITGYNIQNFDFPYLLNRAA
TLKVNMFPYLGRVWGIKSVLKDSNFQSKQMGRRENKTVNMEGRVQFDLLQVLLRDYKLRS
YTLNAVSFHFLQEQKEDVQHSIITDLQNGNEQTRRRLAVYCLKDAYLPLRLLQKLMCVIN
YMEMARVTGVPLTYLLSRGQQIKVVSQLLRQAMKQDLVMPVVRVEGGEDYTGATVIEPEK
GYYSVPITTLDFSSLYPSIMMAHNLCYTTLLQKGQVDKLGLAPEDFIKTPTGDLFVKSSV
RKGLLPEILENLLGARKRAKAELKKETDPFKKQVLDGRQLALKISANSVYGFTGAQVGKL
PCLEISQSVTGFGRQMIEQTKQLVESRYTISNGYQADAKVVYGDTDSVMVKLGVATVQEA
MNLGKEAADWVSSHFVPPIKLEFEKVYYPYLLINKKRYAGLYFSSDAEHHDKMDCKGIET
VRRDNCPLVANLINTCLQNILIDRDPDGAVAHAKEVISDLLCNRIDISQLVITKELTRTA
QEYAGKQAHVELAERMRKRDAGSAPNLGDRVPYVIIKAAKGVAAYMKSEDPIYVLENNIP
IDTQYYLEQQLSKPLLRIFEPILGESKAESVLLKGDHTRCKTVLTSRVGGLMAFAQKRST
CIGCRAVLKTDVAVCDFCKKRESELYQKEIAHLSTLEEKFSRLWTQCQRCQGSLHEDVLC
TSRDCPIFYMRKKVQKDLDDQEKLVSRFGW
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgaaggcgaatcacttccttctttttgaccaattgcagtcctccgtggacctacgcaat
tttaccgggaaaacgaaaacggatgttgctcatgtccggtggaaactgacattcaacact
gtgaagtggcgggagatttatctagtgcatatatggagtaatagagctcgagctgcaata
aaaggctgcttcagaatggactttaaaaggcgcaatggaggccctggaatgggcggggct
tcacaggccaagaaggggaaaattagcacagaatgggaggatagtccctcccagtttgaa
gaggaacttgctctatttgatgaaatggaaatggaggtggagtcaggggagggccaagcc
ggccatgatgtcattccagtgggtgagttattctctgctgatcttaatccacgttggaaa
cgacctcatgcaccgcctcttcaaccaaactcagacacactcatttttcagcagatagac
ctggattactacctgggatctgcggtagcaggtatgcctgggcaggtacagggcaaagtg
cccatagtacgtatgtttggtgtgacggacagtggaaatagcgtgtgctgccacattcat
ggattcgccccgtatttctatgttcctgcccccaacggttttacaaatgcacacttggct
gagtttcagagagagctgaattctgctgtattgaaggacatgcgctccaataaagacaac
atggcggtcactgtgctggcattggacatcaccacaaaagaaagtatgtatcattaccat
ggaaaccgacctcaggactttctgcgcattaccatggcgatgccacgtctggttgcccca
gcgaagcgtatcctggagcagggctttaaatttgccaatttcgccacccagagctaccag
gcttttgaagccaacatcgactttgagatcaggttcatggtggacagtgatgttgtcggt
tgctgctggattgagcttccaaaagggaagtacagggtgagggaagagagaagtgaagga
cagaccgattcaaaatatccaggaaaggtttccctgtgtcagtatgaggtggatgtggca
tggaatgatctggtcagtcatccagctgaaggagaatggcagaggatcgctccactcaga
gtcctgagctttgatattgagtgtgctggcagaaaaggtgtgtttccagagccggagatc
gaccctgtgattcagatcgcctctatggtgcagcgtcagggagagaaggagccgtttatc
cggacagtcttcaccttacagagctgttccagtatagtgggctcccagattctctgcttt
actcaggagaggcagctactgcagagttggggtgagtttatgaggacagtggatcctgac
atcatcactggctacaatatccagaactttgactttccgtacctcctcaacagagctgcc
accttaaaggtgaatatgttcccatatctgggtcgtgtgtggggcatcaaatccgttctg
aaagactccaacttccagagcaaacagatgggtcgcagagagaacaaaactgtgaatatg
gaaggacgtgtgcagtttgacctattacaggtgttgctgagagattataaactgcgctct
tacacactaaacgccgtcagtttccattttctgcaggagcagaaggaggatgtgcagcat
tccatcatcacagatctacagaatgggaatgagcagacccgcaggcgtttggctgtatac
tgtctgaaggatgcgtatctgcccctgcgcttgctgcagaagttgatgtgcgtcattaat
tacatggaaatggccagagtaactggggtgcccctgacttacctgctctctcgcggacag
cagattaaagtggtttcacagctcctgagacaggctatgaagcaggatctggtgatgcca
gtggtgagggtagagggaggggaggactatactggagccactgtcatagaaccagagaaa
gggtattacagtgttcctataacaactctggatttctcctcactgtatccctccatcatg
atggctcacaatttatgttacactactctcctgcagaagggccaggtggacaaactgggt
ctggctccagaggatttcatcaagacccccactggtgatctgtttgtgaagagctctgtg
aggaagggccttctacctgagatcctggaaaacctgctgggcgccaggaaaagggcgaag
gcagagttgaagaaagagacggacccctttaaaaagcaggtgctggacggaaggcagttg
gctttgaagatcagtgcgaactcagtatatgggttcactggggctcaggtgggcaaactg
ccctgtttggaaatctcacagagcgtcacaggctttggtaggcagatgattgaacagacc
aaacagcttgtggaatcaagatacacaatctctaacggttaccaggcagatgcaaaggtt
gtctacggagacacagactctgtgatggtgaaactaggtgttgccacagtgcaggaagca
atgaatctgggaaaggaggcagctgattgggtctcctcccacttcgttccaccaatcaaa
ttagagtttgaaaaggtttattacccatatctgttgatcaataaaaagaggtatgccggg
ctgtatttctcttctgatgctgaacatcatgataagatggattgcaaaggaatagagact
gtcagacgagacaactgccctctagtggccaaccttatcaacacatgcctccaaaacatc
ctcattgacagagaccctgatggagcagtagcccatgctaaagaggtgatctctgacctt
ctgtgtaaccgcattgacatcagtcagctggtcataactaaagagctgacacgtaccgca
caggagtatgccggcaaacaggcccacgtcgaacttgccgagaggatgcggaagcgtgat
gccggtagcgctccaaacctcggagatcgagttccgtacgtcatcatcaaagcagcaaag
ggagtggcggcatatatgaaatcagaggaccccatctatgtgctggagaacaacatccct
atagacacgcagtactacctggagcaacagctttccaagcctttactgcgcatctttgag
cccatactgggagagagcaaagctgagagtgtattactgaagggagatcacacacgctgt
aagacggtcttgacatccagggtcggtggtctcatggctttcgctcagaaaagaagcact
tgcattggctgcagagctgtgctcaaaactgatgtggccgtatgcgacttctgcaaaaag
agagagtctgagctttatcagaaagagattgctcatctgtcaacactagaggagaaattc
tctcgtctgtggactcagtgtcaacgctgtcaaggttcactccatgaagacgtgctttgt
accagtcgagactgccccatcttttacatgagaaagaaagtgcagaaagatttagacgat
caggagaagctcgtttcccgttttggctggtga
DBGET
integrated database retrieval system
