Rhinichthys klamathensis goyatoka (western speckled dace): 130087685
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Entry
130087685 CDS
T09701
Symbol
trpa1b
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1b
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
rkg04040
]
130087685 (trpa1b)
Ion channels [BR:
rkg04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
130087685 (trpa1b)
BRITE hierarchy
Motif
Pfam:
Ank_2
Ank
Ank_4
Ank_3
Ank_5
Ion_trans
GIY_YIG_domain
Motif
Other DBs
NCBI-GeneID:
130087685
NCBI-ProteinID:
XP_056110107
LinkDB
All DBs
Position
Unknown
AA seq
1106 aa
AA seq
DB search
MQFGKEFVRQNSFYKCVINEGETDLDSADVFELAFKGKASAIDHLIQKIPERLSFRDENG
ASLLHYASAGGNLDIIRLIVSTVGPEELNVQDEQGRTPLHWAVEKDQQQSCELLLDLGAD
PNILNSALMGPLHLAVTKRYNHLVEVLLSCDRTDVNLEGDLGNTPVMLACSNNNCQALRS
LFKRGAKMCLQNKLGHYAIHTVAFAGAKEAMELVLKIGEELGISTSVHINYLDKTKSTPL
HLAVRGGNIEVIKLCIIKGARVDQQQCDKSTALHFACTQGALDAIKIMISSYNRVEDIIN
LRDGANQTPLHRATLFDHVELAEYLISKGADIDCIDCKGLSPLLMASNCSAWKTVAYLLS
IGVNFKVKDKAGRNFLHLVILQPKGLKNLPETVLQSNAVKEMLSDEDVEGCTPLHYACKL
GIHDSVKNMLGLNIFLGQKSREKKSALHFAAEYGRLNTCHRLLENLTDSKMLNDWDEKGL
TSLHLASRAGHTQVVELLLRRGALFQNDYKGWSCLHHAAAEGYTQTMKILLAANVKLLDG
TNEDGNTALHIAAQAGHVGAVLLLLERGAEITLNNADNSFLHEAVRNEKKDVVNATIESE
RCAEALTSFKAKSRCVVMDIIEFLPESFKHLLDRCIVESDHDANSPDYHIRYDFHWLQAP
IQLKKYAKADKTMNFQPLAAMNAMVRYNRLELLTHPVSRKYLEMKWKAYGSKVHLLNLAV
YLLGLLPLTYLILNLRPSQDISTNGTSVTMVPVSFSEQKCLISVCIIMVLVMNVYSICKE
LVQLAQQRINYFTDFSNPADWSAAISSLVFVIPMCFNVDNTWQWQAGAYAILTSWIGFLL
YFQRFERIGIYVVMFGGIVRTLVCIMVLFIFLLLAFGLAFYALMLHRAEFNSIGLALAQT
FVMTVGELNYQSTFLNTYEEGHMAFPGVTYSVFVLFVLLMPILLMNLMIGLAVGDIAEVQ
RNAELKRIAMQIDLHTVLEEKLPYWFLKRVDKSSITVYPNKCKKLLIQVFIDGEIQNTVR
TRLNLCSRQGGHLERELHKQKNRLKVVSCMLEKQHDLLKLIIQKMEITSEADEYDGPHNP
RALKQSTSSSQKSKWVPLMQAIRTKK
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atgcagtttggaaaggagtttgtgaggcaaaacagcttctacaaatgtgtgataaatgaa
ggggaaacagacctggattctgcggatgtgtttgagttggctttcaaagggaaggcgtct
gctatcgaccacctgatccagaaaattccagaacgcctaagcttcagagatgagaatgga
gctagcctactgcactatgcctcagccggaggaaacctggacataattcgactcattgtt
tctactgtgggtcctgaggagctgaatgtacaggatgagcagggcagaactcctctgcac
tgggctgtggagaaggatcaacagcagagctgtgaattactgttagacctgggtgctgac
cccaacatcctcaacagtgccctgatgggccctctgcatttggctgtcactaaaagatac
aatcatctggtagaggtccttctgtcctgtgacagaacagatgtcaatctggaaggggat
ctgggaaacaccccagtgatgctggcctgcagcaataataattgccaagctctccgttct
cttttcaaacgtggcgccaagatgtgtcttcagaacaaactgggtcactatgccatccat
acagttgcttttgcaggtgccaaagaggccatggagctggttttgaaaattggagaagag
cttggcatttccacttcagtgcacattaattatttggataagaccaaaagcacccccctc
catctagctgtacgtgggggtaacattgaggtgatcaaactttgcatcattaaaggagcc
agagtggatcagcaacagtgtgacaaatccacggccctccactttgcctgcactcagggt
gctctggatgccatcaaaatcatgatttcctcttacaacagagtggaagacatcatcaac
ctcagggatggagccaatcagacccccttacatagagccacgttgtttgatcatgtcgag
ttggctgaatatcttatttcaaagggagcagatattgactgtattgattgtaagggactg
tctccactgctgatggcctccaactgcagtgcttggaaaactgttgcatatttactgtca
ataggtgtcaatttcaaagtcaaagacaaagcaggtcgcaacttcctccaccttgtcatt
cttcaaccgaaagggctgaaaaatcttcctgagacagtcttacagagtaatgctgtgaag
gagatgttgtctgatgaggatgttgaaggctgcactcctctgcactacgcctgcaaactt
ggcattcacgattcggtcaaaaatatgctgggtctcaatatcttcttgggtcaaaagtca
cgggagaagaaatcagcgcttcacttcgctgcagaatatgggcgtttaaacacatgccac
aggctgctggagaacctcacggactccaaaatgctgaatgattgggacgaaaagggtctg
acatcccttcatcttgcttcaagggcaggacacacacaagtagtggagctgctgctccgg
aggggagcgctgtttcaaaatgattacaaaggctggtcctgtttacatcatgctgcggct
gagggatacacacagacaatgaaaatcctcctcgcagccaatgtcaaactactggacgga
acaaatgaagatgggaacacagcccttcacattgctgcacaagcgggacatgtaggtgct
gttttgctgttattggaaagaggagctgaaatcactctcaacaatgctgacaactctttt
ttgcatgaagctgtgcgaaatgagaaaaaagatgtagtgaatgccactatcgaaagtgag
aggtgtgctgaggcattaacgtcatttaaagccaaatcccgctgtgtcgtgatggacatc
atagagttcctcccggagtctttcaagcaccttctggaccggtgtattgttgagtctgat
cacgacgccaacagtccagattatcatatcaggtacgattttcactggcttcaagctcct
atacagttgaagaagtatgctaaagcagacaaaaccatgaatttccaaccattggcagct
atgaatgcaatggtgcggtacaaccgcctggagctcctcactcaccccgttagccgaaaa
tacctggaaatgaagtggaaggcatatggaagcaaggttcatttgctcaacctggcagtc
tacctgcttggcttgttgcccctcacatacctcatcctcaatctgagaccgagccaggac
atttctaccaatggcacatctgtcaccatggtgcccgtatcttttagtgagcaaaaatgt
ttaatctcagtctgtattatcatggtgctcgtcatgaatgtgtattccatttgcaaagag
ctggtgcagttggctcagcagcgaataaattacttcacggacttctctaaccctgctgac
tggagtgcagctattagctctttagtatttgtcattcccatgtgcttcaatgtagacaac
acgtggcaatggcaggctggagcttacgccattttgacttcatggatcggcttcctgctc
tacttccagaggtttgagcgtattggaatctacgtggtgatgtttggtggaatcgttagg
accctggtatgcatcatggttctttttatctttcttttgctggcattcggattggccttc
tacgctttgatgctccaccgggctgagttcaactccatcggccttgcacttgcccagaca
tttgtgatgacagtgggagagctgaactaccagagcacattcctgaacacttatgaagaa
ggccacatggcattccctggggtcacctattctgtgtttgtgctttttgtgcttctcatg
cctattcttctcatgaacctaatgattggtttggcagtaggagacattgcagaggtacag
agaaacgcagagttgaaacggatagccatgcagatagatcttcacactgtcctcgaggag
aaactaccttactggttcctgaagcgagtggacaaatcatctatcaccgtctatcccaat
aaatgcaagaaattgctgatacaggtcttcattgatggtgagatccaaaacacagttcgc
acccgtctgaacctctgctcacgacagggagggcatctagagagagagctgcacaaacag
aagaacaggttgaaagtggtgtcctgtatgctggagaaacagcatgatctgctcaaactg
atcattcagaagatggaaatcacttctgaggctgatgaatatgacggcccacataaccct
agagctctgaaacagtccacttcctcatctcagaagtcaaagtgggtcccactgatgcaa
gctattaggacaaagaaataa
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