Rhinichthys klamathensis goyatoka (western speckled dace): 130102809
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Entry
130102809 CDS
T09701
Symbol
grin2cb
Name
(RefSeq) glutamate receptor ionotropic, NMDA 2C
KO
K05211
glutamate receptor ionotropic, NMDA 2C
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04020
Calcium signaling pathway
rkg04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
130102809 (grin2cb)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
130102809 (grin2cb)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
rkg04040
]
130102809 (grin2cb)
Ion channels [BR:
rkg04040
]
Ligand-gated channels
Glutamate (ionotropic)
130102809 (grin2cb)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
SBP_bac_3
ANF_receptor
NMDAR2_C
Motif
Other DBs
NCBI-GeneID:
130102809
NCBI-ProteinID:
XP_056124834
LinkDB
All DBs
Position
Unknown
AA seq
1328 aa
AA seq
DB search
MATPQGCWGPSLQLLFFFHLLLNVVPPCLGRPFFGPPSVNVAVVFSGMAHHSEIKGRLSP
ENFLDMPLEVNPITVLVNDTNPRALLTRLCQTMAAESLHGVVFEDDVDSEAVAQILDFIS
SQTSIPIVGISGGSAVVIPHKAEGSTFLQMGSSIEQQINAMFKVMEEYNWGNFVVITSLY
PGYETFVDYIRSFTDTSYFLWELQDVLSFEMSVGANDIRTRRLLQQVDSQVYLVYCSHEE
AQYLFRMASDVGLLGPGYIWVIPSLAVGNPEASPPDSFPVGVISIITDRWRKTLRQRVRE
GVAVIVKGVYSFHKHRGFIPEGHSDCNSPAKLNANNSLFRHMRNVSWEHKDLSFNADGYL
TNPSMVIIALDRERHWDKVGNYEGGILQMRYPVWPRYGSFLEPVSDNRHLTVATLEERPF
VVVESVDPATGTCVRNTVPCRRQSNRTESITGHTEPYTKLCCKGFCIDILKKLSRTIKFS
YDLYLVTNGKHGKMVRGVWNGMIGEVFYKRADMAIGSLTINEERSEIVDFSVPFVETGIS
VMVARSNGTVSPSAFLEPYSPAVWVMMFVMCLTVVAVTVFVFEYFSPVGYNRSLVSAKAP
GGPTFTIGKSVWLLWGIVFNNSVPIENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMI
QEQYIDTVSGLSDKKFQKPQEHYPPFRFGTVPNGSTERNIRSNYPDMHTHMIKYNQKGVE
EALNSLKTGKLDAFIYDAAVLNYMAGKDEGCKLVTIGSGKVFATTGYGIALQKDSRWKRP
IDLALLQFLGDGDTQRLETVWLSGICQNEKNEVMSSKLDIDNMAGVFYMLLVAMGLSLLV
FAWEHLLYWKLRHSVHKSDHLDFLLAISRGIYSCFNGVEDFGRSTSIQNPDLTANYAQAN
MLKMLQTAKDIVSSAKVENSLDNATKTIENWSRHGGSLPARIPLVTTTEKVPGHFSYITN
VTENHIPHMQRSITPPFTQHIKTTSPPPMVNHRVLTRPTPLRYTLPARTRGLYDGMLPVS
SLSTPHLAMHDPPSDLAHPGSSFVPYRDMYTEHHKSCHNDLSDAVRRKKRPQNLIVESMD
LRGLHDYKDQSTCHTEANSFAENHLSSSFGENPFVAADTACNSCVKTYFDPAFDDIPLIG
KRKLHRRPSFLKATWGPDRVRFQNDRSTAAASSRGAIPDLFPCVDVHGRVRNTMCYAQPM
DHTSLHAFRRNTRKSQKLRHSQSTRLPTYKEAIFHNVAAVRRASSLVHRPYSYPELPVYQ
SPLSYGPAELCNIFPCMGHPSDSVYGGYRVPTHLQDDHLVPVPGSRVVHTSPIVPMTWGR
ISSLESEV
NT seq
3987 nt
NT seq
+upstream
nt +downstream
nt
atggccactcctcaagggtgctggggtccctctcttcaactcctcttcttctttcatctg
ttactcaatgtagtgcctccctgtctgggacgtccattctttggccctccttcggtcaac
gtggctgtggttttcagtggtatggcccaccacagtgagatcaagggccgtctgagtcca
gaaaacttcctagacatgcccctggaagtgaaccccatcaccgtgcttgtgaatgacact
aaccccagggcattactcacacgtctctgtcagactatggcagcagagagcctccacgga
gtggtgtttgaagatgacgtggactcagaagctgtggcacaaatcttagactttatctcc
tctcagacgtccattcccatagtaggcatcagtggaggttctgcagttgtcatcccacat
aaagctgaaggctctacctttctccagatgggatcttctatagagcagcaaataaatgca
atgttcaaagtgatggaggagtacaactggggtaactttgtggtgatcaccagtttgtat
cccggctacgagaccttcgtggactacattcgctccttcacggacaccagctacttcctg
tgggagctgcaggatgtgctgagcttcgagatgtccgtgggggccaatgacatccgcaca
cgtaggctactacagcaggtggactcgcaggtatatctagtgtactgttcccacgaggag
gcgcagtacttgttcaggatggcctctgatgtggggcttctggggcctggatacatctgg
gtcatccccagtctggctgtggggaaccctgaagcgtcccctcctgacagtttcccagtg
ggcgtcatcagtattatcacagaccgctggaggaaaacactgcgccagagggttcgggaa
ggagtggcagtcattgtaaaaggggtgtacagtttccacaagcacagaggatttattcct
gagggtcacagtgactgcaatagtcctgccaaattgaatgccaacaattctctcttcagg
catatgcgaaatgtgtcatgggagcataaggacctctccttcaacgctgatggctatctc
actaatccttccatggtgatcattgctttggatcgagagagacactgggacaaggtagga
aactatgagggagggattctgcagatgcgttaccctgtatggccccgttatgggagcttc
ctggagcccgtatctgacaaccgccacctgaccgtggctaccctggaggagaggcctttc
gtcgtcgtggagagtgttgatcctgccacgggcacttgtgtgcgcaatactgtgccgtgc
cgtcggcagtccaaccggactgaaagtataaccggtcacactgagccttacaccaaactc
tgctgcaaaggcttctgcatagacatcctaaagaagctctcacgcacaatcaagttttca
tatgacctttatctggtcaccaatgggaaacatggcaagatggtccgtggcgtctggaat
gggatgattggagaggtcttctacaagcgtgcagatatggcaattggctctcttaccatc
aatgaggagcggtcagagattgttgacttttcagtgccatttgtggagactgggattagt
gttatggtggccagaagcaatggaacagtctcaccttctgccttcctggagccttacagt
ccagccgtgtgggttatgatgttcgtaatgtgcctgactgttgtggcagtcaccgtgttc
gtctttgagtacttcagccctgttgggtataaccggagccttgtcagtgccaaagcccct
gggggtccaaccttcaccattggaaagtccgtctggctcctgtggggaatcgtcttcaac
aactctgttcctattgaaaaccccaaaggcacaaccagcaaaattatggtcctggtttgg
gctttctttgctgtcatctttctcgccagctacacagccaatttagctgccttcatgatc
caagagcagtacattgacacagtgtctggacttagtgacaaaaagtttcaaaaaccccag
gaacattatcctccttttcgcttcgggacagtcccaaatggcagcaccgagaggaacatt
cgaagcaattaccctgacatgcacacccacatgataaaatacaaccagaagggtgtggaa
gaagctctcaacagccttaagacagggaagttggatgccttcatatatgatgcagcagtt
cttaattatatggctggcaaggatgagggctgcaagctggtcaccattggtagtgggaag
gtgtttgctaccacaggctacggcattgctctgcagaaggactcccgctggaagcgcccc
atagacctggctctcctccagttcctgggagatggggacacacagagactggaaacagta
tggctgtctggaatatgtcagaatgagaaaaacgaggtcatgagctctaaactagacata
gacaacatggcaggtgttttctacatgttgctcgtggccatgggcctcagcctgctggtc
tttgcttgggaacatctactttactggaaactgaggcactctgtccacaagtctgatcac
ttagactttctactggccatcagcaggggcatatacagctgctttaatggcgttgaagac
tttggcagatctaccagcatacagaatccagatctcactgccaattacgcccaggccaac
atgctgaaaatgctgcagacagccaaggacattgtctcctcagccaaagtggagaactca
ttggataacgccaccaagaccattgagaactggagcagacacggcggcagcctcccagca
cgtatcccactggtgaccacaactgaaaaggtccctggtcacttctcatatatcactaac
gtcacggagaaccacatacctcacatgcagcgttccataactccacctttcacgcagcac
atcaaaaccactagcccaccaccgatggtaaaccatagagttctaacacggcccactcct
cttcgctacacacttcccgccaggaccaggggtctctacgacggtatgcttcctgtatcc
agtctaagcacacctcatctagccatgcatgatcctccatccgacctggcccatcctggt
tcttcctttgttccatatagagacatgtacaccgaacaccacaagtcttgtcacaatgat
ttgtcagatgccgtcaggaggaaaaagagaccccaaaatctcattgtggagtccatggat
ctgagggggcttcacgattataaagaccaatcaacatgtcataccgaagcaaacagtttt
gctgaaaaccacctgtcctcttccttcggcgaaaatccttttgtagcagcggacacagct
tgtaattcctgtgtcaaaacgtactttgaccctgcgttcgatgacataccgttgataggg
aaaaggaagcttcatcgcagaccgtcgtttctgaaagccacttggggccccgacagagtc
cggttccagaatgacagatccacagcagcagcctcctcacgaggagctatacctgacctg
ttcccttgtgtggatgtacacggacgggtgaggaacaccatgtgttacgcccaaccgatg
gatcacacctcccttcacgccttccggcgaaacaccaggaaaagtcagaagctgagacac
agccagtccaccaggcttcccacctacaaggaggcgattttccacaatgtggcagctgtc
aggagagcgtcaagtttggtgcatagaccctattcctacccagagctgccagtctaccag
agccccctgtcatatggaccagctgaattatgcaacatcttcccctgtatgggacatcct
agtgacagtgtatatggagggtatagggtacccacacacctacaagatgaccatctagtg
cctgttccaggcagcagggtggttcataccagccctattgtgcccatgacatggggcaga
atttccagtttggaatcagaggtgtga
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