Rhinichthys klamathensis goyatoka (western speckled dace): 130105768
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Entry
130105768 CDS
T09701
Symbol
grin2ca
Name
(RefSeq) glutamate receptor, ionotropic, N-methyl D-aspartate 2Ca
KO
K05211
glutamate receptor ionotropic, NMDA 2C
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04020
Calcium signaling pathway
rkg04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
130105768 (grin2ca)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
130105768 (grin2ca)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
rkg04040
]
130105768 (grin2ca)
Ion channels [BR:
rkg04040
]
Ligand-gated channels
Glutamate (ionotropic)
130105768 (grin2ca)
BRITE hierarchy
Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
SBP_bac_3
NMDAR2_C
ANF_receptor
Motif
Other DBs
NCBI-GeneID:
130105768
NCBI-ProteinID:
XP_056127903
LinkDB
All DBs
Position
Unknown
AA seq
1400 aa
AA seq
DB search
MGVHLGCLSDTLWLPLLLLLSVFSAPRCQCRPFGMVEPTVNVAVVFSGSAYQLEIKGRLS
RENFLDLPLEVNPITVLVNNTNPRTLLTRICDTLAANRVHGVVFEDNIGSEAVAQILDFI
STQTAVPIVGISGGSAVVLPHKGDGSTFLQLGSSIEQQINGMFKMMEEYNWDSFVVVTSL
YPGYNTYVDYIRSFIDTSYFLWELQDILTFDMSADGMNDLRAHRFLQQIDAQVLLVYCSH
DEAQYLFTMAREVGLVGPGYIWFIPSLAVGNPNISPPDSFPIGLISIISDRWKMSLRNRV
RDGVAIVVKGVESFRKQKGFIPDGHMDCLSPFRPSTNDSLYRHMLNVSWENTDFSFNSDG
YLVNPSMIIITLDRGRQWDKVGNYEYGILQTRYPVWPRYGTFLEPVSDNRHLTVATLEER
PFVIVEAVDPVTGTCLSNTVPCRRQSNKTETIVGHTEPYTKLCCKGFCIDILKKLSRNIR
FSYDLYLVTNGKHGKLVRGIWNGMIGEVFYKRADMAIGSLTINEERSEIIDFSVPFVETG
ISVMVARSNGTVSPSAFLEPYSPAVWVMMFVMCLTVVAVTVFVFEYFSPVGYNRSLVSAK
DPGGPTFTIGKSVWLLWGIVFNNSVPIENPKGTTSKIMVLVWAFFAVIFLASYTANLAAF
MIQEQYIDTVSGLSDKKFQRPQDQYPPFRFGTVPNGSTERNIRSNYPEMHSHMVKYNQKG
VEDALNSLKTGKLDAFIYDAAVLNYMAGKDEGCKLVTIGSGKVFATTGYGIALQKESRWK
RPIDLALLQFLADGETQKLQTVWLTGICRNEKKEVMSSKLDIDNMAGVFYMLLVAMGLSL
LVFAWEHLLYWKLRHSVHKSERLDFLLAISRGIYSCFNGVEDTDRKGNMQNPDVTTSYTQ
ANMLKMLQTAKDIVSSARVENSLDNATKTIENWSRRDPESARPSLPTCLIGTDFSHSRLP
CIASVTDNHSPYPQNMDSTTQHLLEKPHVGTRPTSLRYTLPARTSHHHIYERTLPISSLS
SPHIAMRDPPPPTAPKPHVYVDQSCHHPTSRYVSYRDFQVPDIFVEHQEPSGSHKQYMAG
LGRKKRSHSYVAASPETRRRDDYDVPQSCLAELKSNHLVENHSHTTPCIRSHFQRPGSSC
NSCSKLYLEPEMDDVPLLGKDKMNRRASFLRATWGGDRIRQLDEKPSTSASSTSCINMPD
LFPRVVVTNPKPSKMYGSAGNNLRYNMAVEPAYLDPAHMGSYPYKTQKLKYSKSIRLPSY
REAILQNTASLRRSSSTLVHGHYSTYLNSYTDLPVYLSPLPQGPGHFHEHSKDTCHLFPC
VNHCPDNATLVPRLGSRPVLYQNTAIGSYEGAGRSNEESLHTVPFSSVRRDRRQVLVARN
VHSPYAPRPWGRVSSLESEV
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgggcgttcatctaggctgtctcagcgacacactgtggctgccgttgctgctgctgctg
tctgtcttctccgccccccgctgccagtgccgaccgttcgggatggttgagcccaccgtg
aacgtggcggtggtgttcagcggctccgcctaccagttggagatcaaggggcgactgagc
cgggagaacttcctggacctgccgctggaggtgaaccccatcactgtgctggtgaacaac
accaacccgcgcactctactgacgcgcatctgcgacacgttggctgctaacagggtgcac
ggggtggtctttgaagataacattgggtccgaggccgtggcgcagatcctggacttcatc
tccacccagacggccgtgcccattgtgggcatcagtgggggatccgccgtcgtcctgcct
cacaagggtgacggttctaccttccttcagctgggctcttccatcgagcagcagatcaat
gggatgttcaagatgatggaggagtacaactgggacagtttcgtggtggtgacgagcctg
tacccaggatacaacacctacgtggactacatccgctcttttatcgatacgtcttacttc
ctctgggagttgcaggacatcttgacgtttgacatgtcggccgacggcatgaacgacctc
cgtgcccaccgattccttcagcagatcgacgcacaggtgctgctggtttactgctcacat
gatgaggcccagtacctgttcaccatggccagggaagtgggtttggttggtccggggtat
atctggtttatccccagccttgcggtgggaaaccccaatatatcacctccagacagcttc
cccattggattgatcagcattatctcagatcgctggaagatgagtttgagaaacagagtc
agggatggtgtagccatcgtcgtgaaaggagtggagagcttccgcaagcagaaagggttt
attcctgacggacacatggattgtctgagtccgtttcggccatccaccaatgacagtctc
tacaggcatatgctgaatgtgtcatgggagaacacagacttttccttcaacagtgatgga
tatctggtcaacccttccatgatcataatcactctggaccgcgggagacagtgggataag
gtggggaattatgagtatggtatcctgcagacgaggtaccctgtctggccccgttatggg
accttcctggagcctgtgtctgacaaccgtcacttgacagtcgccacactggaggaaagg
ccttttgtgatcgtagaagctgtggatcctgtcactggcacctgcctcagtaacaccgtc
ccctgtagacggcagtccaacaagacagaaacgatagtcggacacactgagccatacact
aaactatgctgcaaaggcttctgcattgacatcctgaaaaagctctctcgcaacatcagg
ttctcctacgacctctacctggtcaccaacggcaaacatggcaagctggtacgagggatc
tggaacggtatgattggagaggtattttataagcgagcggacatggccattggctctctg
accataaatgaggagcgctctgagatcattgacttctctgtgccgtttgtggagactggc
atcagtgtgatggtggccaggagcaatggaaccgtgtctccgtcagccttcttggagccc
tacagcccagcggtgtgggtgatgatgtttgtcatgtgtcttacagtcgtggcagtgact
gtgtttgtgtttgaatactttagtcctgtgggctacaaccgcagcctggtcagtgccaaa
gatccaggtgggccaacgttcaccatcgggaagtcagtctggctgctgtgggggatcgtc
ttcaacaactcagtgcccattgaaaaccccaaaggcaccaccagtaagatcatggtgctg
gtgtgggccttctttgccgtgatcttcctggccagctacacggccaacctggccgccttc
atgatccaggagcagtacattgacactgtttctggactgagtgacaaaaagttccagaga
ccgcaagaccaatatcctccattccggtttgggaccgtgcccaatggcagcacagaacga
aacataaggagcaattatcccgaaatgcattctcacatggttaagtacaaccaaaaaggt
gtggaggatgctctcaacagtctcaaaactgggaagctggatgccttcatatatgatgca
gctgtgcttaactacatggccggtaaagacgaagggtgtaaattggtgaccatcggtagc
gggaaggtatttgccacgacaggctacggcatcgcccttcagaaagaatctcgctggaag
cgccccatagacctcgctcttcttcagttccttgcagacggtgagactcagaagctgcag
acagtgtggctcactggaatctgtcgtaacgagaagaaagaggtgatgagctctaagctg
gacattgacaacatggccggagtgttttacatgcttctagtggctatgggtctcagtctg
cttgtctttgcatgggaacatctactgtactggaagctacggcattctgtccacaagtct
gagcgtttggacttcttgctggctattagcaggggaatctacagctgctttaacggtgtg
gaagacacggaccgtaaagggaacatgcagaacccggatgtcaccaccagttacactcag
gccaacatgctcaagatgctccaaaccgctaaggacattgtctcatctgcaagagttgaa
aactccttggacaatgccacaaagaccatagagaactggagtcgacgtgatccagagtca
gccagacctagtcttcctacctgcctcataggaacggacttcagccatagtcgcctgccc
tgcatcgccagcgttactgacaaccactcaccataccctcaaaacatggacagcaccact
cagcacttactggagaagcctcatgtgggaacacggcctacctcactgcgctacactctt
cccgcacgcaccagccaccaccacatctatgaacgaacgctacccatatctagcctcagt
agtcctcatattgccatgagagacccaccacctcctacagccccaaaaccccacgtgtac
gtggaccagtcctgtcaccaccctacctctcgctacgtctcttaccgtgactttcaggta
ccggacatctttgtggaacaccaggaaccttcgggaagccataaacaatacatggcaggt
ctgggtcgcaaaaaaaggtctcatagctacgtagcagcatctccagaaactcgaaggagg
gacgactatgatgttccccagtcctgtctggctgagcttaaaagcaaccaccttgtggaa
aaccattcccatacgacaccctgcataagaagtcacttccagagacctggctctagctgc
aactcctgctccaagttgtatctagaaccggagatggatgacgttcctcttctggggaaa
gataaaatgaaccgtcgcgcctcttttctcagggctacatggggtggtgacaggatccgg
cagctggatgagaagccctccacctctgcatcttctaccagttgcatcaacatgcctgat
ctgttccctcgagtggtggtgaccaatcccaagccttcgaagatgtatggcagcgctggt
aacaaccttcgctacaacatggctgtggagccagcctatctggacccagcccacatgggc
tcttacccgtataagacgcagaagctcaagtactcaaagtccatccgccttccttcatac
cgggaggcgattctacagaatacggcatccctgcggcgctcctcttccacactagtgcac
ggacactactcaacgtacctgaactcttacacagacctgccggtgtacttgagtcctcta
ccgcagggacccggtcacttccatgagcattccaaagacacgtgccacctgtttccatgt
gtcaaccattgcccggataatgccaccttggtgccccggttaggcagcagacctgtattg
taccagaacactgctattggaagttatgagggggctgggcgctcaaacgaggagtcgttg
cacactgtgccgttctcttccgtgcgcagggaccgcaggcaggttctagtggcacggaac
gtacacagtccctatgccccacggccctggggtagggtatctagtctggagtcagaggtt
tga
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