Rhizobium johnstonii: RL2823
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Entry
RL2823 CDS
T00402
Symbol
cobB
Name
(GenBank) putative cobalamin biosynthesis protein
KO
K02224
cobyrinic acid a,c-diamide synthase [EC:
6.3.5.9
6.3.5.11
]
Organism
rle
Rhizobium johnstonii
Pathway
rle00860
Porphyrin metabolism
rle01100
Metabolic pathways
rle01240
Biosynthesis of cofactors
Module
rle_M00925
Cobalamin biosynthesis, aerobic, uroporphyrinogen III => precorrin 2 => cobyrinate a,c-diamide
Brite
KEGG Orthology (KO) [BR:
rle00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00860 Porphyrin metabolism
RL2823 (cobB)
Enzymes [BR:
rle01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.5 Carbon-nitrogen ligases with glutamine as amido-N-donor
6.3.5.9 hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing)
RL2823 (cobB)
6.3.5.11 cobyrinate a,c-diamide synthase
RL2823 (cobB)
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GFIT
Motif
Pfam:
GATase_3
CbiA
AAA_26
AAA_16
Fer4_NifH
Motif
Other DBs
NCBI-ProteinID:
CAK08313
RhizoBase:
RL2823
UniProt:
Q1MFG1
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All DBs
Position
complement(2982172..2983479)
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AA seq
435 aa
AA seq
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MSGLLIAAPSSGAGKTTVTLGLLRALRRRGIAVAPGKAGPDYIDPAFHAAASGTLCLNFD
PWAMRPELISANAALHRSGDRILVIEAMMGLFDGAADGKGTAADLAAQLGLSVVLVVDAS
RMSQSVAPLVSGFAGFRADVRVAGVILNKVGSDRHEAMLRQALEAIRMPVIAVIGSDKAL
SLPERHLGLVQAGEHATLDAFIDHAADAVSEECNFEFLLRIAKQGLNRPSAANIDRLPPL
GARIAVARDIAFAFSYEHMLLGWRRRGAAISFFSPLADEPPALDADAIYLPGGYPELHAG
RLAEAQNFRAGMLDAAARDIRIYGECGGYMVLGDGLIDAEGKRHQMLGLLPVVTSYAERK
RHLGYRRVVPLDGAFFARMMTAHEFHYSTVVSEGQGKRLFQVQDALGTDLGAAGLRRDQV
AGSYMHLIDLAGAAG
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcctcctgattgcagcaccatcctccggcgccggcaagacgacggtgacgctc
ggtctgctccgggcgcttcgccggcgcggcatcgcggtcgcgcccggcaaggccggccct
gactatatcgatcccgccttccatgcggccgcaagcggcacgctctgcctgaatttcgat
ccctgggcaatgcgcccggaactgatctcggccaatgccgcccttcaccgttccggcgac
cgcatcctcgtcatcgaggcgatgatggggcttttcgacggggcggccgacggaaaggga
acggcggccgatctcgccgcccagctcgggctttccgtggtgctcgtcgtcgatgcctcg
cgcatgtcgcagtcggtcgcgccgctggtttcgggttttgccggtttccgtgccgatgtc
cgcgtcgccggcgtcatcctcaacaaggtcggcagcgaccggcacgaagcgatgctgcga
caggcgctcgaagcgatccgtatgcctgtcatcgccgtcatcggcagcgacaaggcgctt
tccctgccggagcgccatctcggcctcgtccaggccggcgaacatgccacgctcgacgca
ttcatcgatcatgcggcggatgcggtctccgaggaatgcaatttcgaattcctgctgcgc
attgcaaagcagggtctcaatcgtccgtcggcggccaatatcgaccgactgccgccgctg
ggtgctcggattgcagtggcgcgcgacatcgcctttgccttttcctacgagcatatgctg
ctcggctggcgccgccggggtgctgcgatctcctttttctcgccgctcgccgacgagccg
ccggctttggatgccgatgcgatctatctgcccggcggttatcccgagctgcatgccgga
cggctggcagaggcgcagaatttccgcgccggcatgctcgatgcggcagcgcgcgacatc
cggatctacggcgagtgcggcggctacatggtgcttggcgacgggttgatcgacgcggag
ggcaagcgtcatcagatgctcggcctgctgccggtcgtcaccagttatgccgagcggaaa
cgccatctgggttatcgccgcgttgtgccactcgacggcgcctttttcgcgcgaatgatg
acggcgcatgaattccactattccaccgtcgtctccgagggccagggcaagcggcttttt
caggtgcaggatgcgctcggaaccgatctgggtgccgccggtctcaggcgcgaccaggtg
gcaggctcctacatgcatctgatcgatcttgccggagcggcaggatga
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