Rattus norvegicus (rat): 29701
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Entry
29701 CDS
T01003
Symbol
Scn11a
Name
(RefSeq) sodium channel protein type 11 subunit alpha
KO
K04843
voltage-gated sodium channel type XI alpha
Organism
rno
Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
rno04040
]
29701 (Scn11a)
Ion channels [BR:
rno04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
29701 (Scn11a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
PKD_channel
GPHH
Motif
Other DBs
NCBI-GeneID:
29701
NCBI-ProteinID:
NP_062138
RGD:
3630
Ensembl:
ENSRNOG00000032884
UniProt:
O88457
LinkDB
All DBs
Position
8:complement(128374441..128444718)
Genome browser
AA seq
1765 aa
AA seq
DB search
MEERYYPVIFPDERNFRPFTSDSLAAIEKRIAIQKERKKSKDKAAAEPQPRPQLDLKASR
KLPKLYGDIPPELVAKPLEDLDPFYKDHKTFMVLNKKRTIYRFSAKRALFILGPFNPLRS
LMIRISVHSVFSMFIICTVIINCMFMANSMERSFDNDIPEYVFIGIYILEAVIKILARGF
IVDEFSFLRDPWNWLDFIVIGTAIATCFPGSQVNLSALRTFRVFRALKAISVISGLKVIV
GALLRSVKKLVDVMVLTLFCLSIFALVGQQLFMGILNQKCIKHNCGPNPASNKDCFEKEK
DSEDFIMCGTWLGSRPCPNGSTCDKTTLNPDNNYTKFDNFGWSFLAMFRVMTQDSWERLY
RQILRTSGIYFVFFFVVVIFLGSFYLLNLTLAVVTMAYEEQNRNVAAETEAKEKMFQEAQ
QLLREEKEALVAMGIDRSSLNSLQASSFSPKKRKFFGSKTRKSFFMRGSKTAQASASDSE
DDASKNPQLLEQTKRLSQNLPVDLFDEHVDPLHRQRALSAVSILTITMQEQEKFQEPCFP
CGKNLASKYLVWDCSPQWLCIKKVLRTIMTDPFTELAITICIIINTVFLAVEHHNMDDNL
KTILKIGNWVFTGIFIAEMCLKIIALDPYHYFRHGWNVFDSIVALLSLADVLYNTLSDNN
RSFLASLRVLRVFKLAKSWPTLNTLIKIIGHSVGALGNLTVVLTIVVFIFSVVGMRLFGT
KFNKTAYATQERPRRRWHMDNFYHSFLVVFRILCGEWIENMWGCMQDMDGSPLCIIVFVL
IMVIGKLVVLNLFIALLLNSFSNEEKDGSLEGETRKTKVQLALDRFRRAFSFMLHALQSF
CCKKCRRKNSPKPKETTESFAGENKDSILPDARPWKEYDTDMALYTGQAGAPLAPLAEVE
DDVEYCGEGGALPTSQHSAGVQAGDLPPETKQLTSPDDQGVEMEVFSEEDLHLSIQSPRK
KSDAVSMLSECSTIDLNDIFRNLQKTVSPKKQPDRCFPKGLSCHFLCHKTDKRKSPWVLW
WNIRKTCYQIVKHSWFESFIIFVILLSSGALIFEDVNLPSRPQVEKLLRCTDNIFTFIFL
LEMILKWVAFGFRRYFTSAWCWLDFLIVVVSVLSLMNLPSLKSFRTLRALRPLRALSQFE
GMKVVVYALISAIPAILNVLLVCLIFWLVFCILGVNLFSGKFGRCINGTDINMYLDFTEV
PNRSQCNISNYSWKVPQVNFDNVGNAYLALLQVATYKGWLEIMNAAVDSREKDEQPDFEA
NLYAYLYFVVFIIFGSFFTLNLFIGVIIDNFNQQQKKLGGQDIFMTEEQKKYYNAMKKLG
TKKPQKPIPRPLNKCQAFVFDLVTSQVFDVIILGLIVLNMIIMMAESADQPKDVKKTFDI
LNIAFVVIFTIECLIKVFALRQHYFTNGWNLFDCVVVVLSIISTLVSRLEDSDISFPPTL
FRVVRLARIGRILRLVRAARGIRTLLFALMMSLPSLFNIGLLLFLVMFIYAIFGMSWFSK
VKKGSGIDDIFNFETFTGSMLCLFQITTSAGWDTLLNPMLEAKEHCNSSSQDSCQQPQIA
VVYFVSYIIISFLIVVNMYIAVILENFNTATEESEDPLGEDDFEIFYEVWEKFDPEASQF
IQYSALSDFADALPEPLRVAKPNKFQFLVMDLPMVMGDRLHCMDVLFAFTTRVLGDSSGL
DTMKTMMEEKFMEANPFKKLYEPIVTTTKRKEEEQGAAVIQRAYRKHMEKMVKLRLKDRS
SSSHQVFCNGDLSSLDVAKVKVHND
NT seq
5298 nt
NT seq
+upstream
nt +downstream
nt
atggaggagaggtactacccggtgatcttcccggacgagcggaatttccgccccttcact
tccgactctctggctgccatagagaagcggattgctatccaaaaggagaggaagaagtcc
aaagacaaggcggcagctgagccccagcctcggcctcagcttgacctaaaggcctccagg
aagttacctaagctttatggtgacattccccctgagcttgtagcgaagcctctggaagac
ctggacccattctacaaagaccataagacattcatggtgttgaacaagaagagaacaatt
tatcgcttcagcgccaagcgggccttgttcattctggggccttttaatcccctcagaagc
ttaatgattcgtatctctgtccattcagtctttagcatgttcatcatctgcacggtgatc
atcaactgtatgttcatggcgaattctatggagagaagtttcgacaacgacattcccgaa
tacgtcttcattgggatttatattttagaagctgtgattaaaatattggcaagaggcttc
attgtggatgagttttccttcctccgagatccgtggaactggctggacttcattgtcatt
ggaacagcgatcgcaacttgttttccgggcagccaagtcaatctttcagctcttcgtacc
ttccgagtgttcagagctctgaaggcgatttcagttatctcaggtctgaaggtcatcgta
ggtgccctgctgcgctcggtgaagaagctggtagacgtgatggtcctcactctcttctgc
ctcagcatctttgccctggtcggtcagcagctgttcatgggaattctgaaccagaagtgt
attaagcacaactgtggccccaaccctgcatccaacaaggattgctttgaaaaggaaaaa
gatagcgaagacttcataatgtgtggtacctggctcggcagcagaccctgtcccaatggt
tctacgtgcgataaaaccacattgaacccagacaataattatacaaagtttgacaacttt
ggctggtcctttctcgccatgttccgggttatgactcaagactcctgggagaggctttac
cgacagatcctgcggacctctgggatctactttgtcttcttcttcgtggtggtcatcttc
ctgggctccttctacctgcttaacctaaccctggctgttgtcaccatggcttatgaagaa
cagaacagaaatgtagctgctgagacagaggccaaggagaaaatgtttcaggaagcccag
cagctgttaagggaggagaaggaggctctggttgccatgggaattgacagaagttccctt
aattcccttcaagcttcatccttttccccgaagaagaggaagtttttcggtagtaagaca
agaaagtccttctttatgagagggtccaagacggcccaagcctcagcgtctgattcagag
gacgatgcctctaaaaatccacagctccttgagcagaccaaacgactgtcccagaacttg
ccagtggatctctttgatgagcacgtggaccccctccacaggcagagagcgctgagcgct
gtcagtatcttaaccatcaccatgcaggaacaagaaaaattccaggagccttgtttccca
tgtgggaaaaatttggcctctaagtacctggtgtgggactgtagccctcagtggctgtgc
ataaagaaggtcctgcggaccatcatgacggatccctttactgagctggccatcaccatc
tgcatcatcatcaataccgttttcttagccgtggagcaccacaacatggatgacaactta
aagaccatactgaaaataggaaactgggttttcacgggaattttcatagcggaaatgtgt
ctcaagatcatcgcgctcgacccttaccactacttccggcacggctggaatgtttttgac
agcatcgtggccctcctgagtctcgctgatgtgctctacaacacactgtctgataacaat
aggtctttcttggcttccctcagagtgctgagggtcttcaagttagccaaatcctggccc
acgttaaacactctcattaagatcatcggccactccgtgggcgcgcttggaaacctgact
gtggtcctgactatcgtggtcttcatcttttctgtggtgggcatgcggctcttcggcacc
aagtttaacaagaccgcctacgccacccaggagcggcccaggcggcgctggcacatggat
aatttctaccactccttcctggtggtgttccgcatcctctgtggggaatggatcgagaac
atgtggggctgcatgcaggatatggacggctccccgttgtgcatcattgtctttgtcctg
ataatggtgatcgggaagcttgtggtgcttaacctcttcattgccttgctgctcaattcc
ttcagcaatgaggagaaggatgggagcctggaaggagagaccaggaaaaccaaagtgcag
ctagccctggatcggttccgccgggccttctccttcatgctgcacgctcttcagagtttt
tgttgcaagaaatgcaggaggaaaaactcgccaaagccaaaagagacaacagaaagcttt
gctggtgagaataaagactcaatcctcccggatgcgaggccctggaaggagtatgataca
gacatggctttgtacactggacaggccggggctccgctggccccactcgcagaggtagag
gacgatgtggaatattgtggtgaaggcggtgccctacccacctcacaacatagtgctgga
gttcaggccggtgacctccctccagagaccaagcagctcactagcccggatgaccaaggg
gttgaaatggaagtattttctgaagaagatctgcatttaagcatacagagtcctcgaaag
aagtctgacgcagtgagcatgctctcggaatgcagcacaattgacctgaatgatatcttt
agaaatttacagaaaacagtttcccccaaaaagcagccagatagatgctttcccaagggc
cttagttgtcactttctatgccacaaaacagacaagagaaagtccccctgggtcctgtgg
tggaacattcggaaaacctgctaccaaatcgtgaagcacagctggtttgagagtttcata
atctttgttattctgctgagcagtggagcgctgatatttgaagatgtcaatctccccagc
cggccccaagttgagaaattactaaggtgtaccgataatattttcacatttattttcctc
ctggaaatgatcctgaagtgggtggcctttggattccggaggtatttcaccagtgcctgg
tgctggcttgatttcctcattgtggtggtgtctgtgctcagtctcatgaatctaccaagc
ttgaagtccttccggactctgcgggccctgagacctctgcgggcgctgtcccagtttgaa
ggaatgaaggttgtcgtctacgccctgatcagcgccatacctgccattctcaatgtcttg
ctggtctgcctcattttctggctcgtattttgtatcttgggagtaaatttattttctggg
aagtttggaaggtgcattaacgggacagacataaatatgtatttggattttaccgaagtt
ccgaaccgaagccaatgtaacattagtaattactcgtggaaggtcccgcaggtcaacttt
gacaacgtggggaatgcctatctcgccctgctgcaagtggcaacctataagggctggctg
gaaatcatgaatgctgctgtcgattccagagagaaagacgagcagccggactttgaggcg
aacctctacgcgtatctctactttgtggtttttatcatcttcggctccttctttaccctg
aacctctttatcggtgttattattgacaacttcaatcagcagcagaaaaagttaggtggc
caagacatttttatgacagaagaacagaagaaatattacaatgcaatgaaaaagttagga
accaagaaacctcaaaagcccatcccaaggcccctgaacaaatgtcaagcctttgtgttc
gacctggtcacaagccaggtctttgacgtcatcattctgggtcttattgtcttaaatatg
attatcatgatggctgaatctgccgaccagcccaaagatgtgaagaaaacctttgatatc
ctcaacatagccttcgtggtcatctttaccatagagtgtctcatcaaagtctttgctttg
aggcaacactacttcaccaatggctggaacttatttgattgtgtggtcgtggttctttct
atcattagtaccctggtttcccgcttggaggacagtgacatttctttcccgcccacgctc
ttcagagtcgtccgcttggctcggattggtcgaatcctcaggctggtccgggctgcccgg
ggaatcaggaccctcctctttgctttgatgatgtctctcccctctctcttcaacatcggt
ctgctgctcttcctggtgatgttcatttacgccatctttgggatgagctggttttccaaa
gtgaagaagggctccgggatcgacgacatcttcaacttcgagacctttacgggcagcatg
ctgtgcctcttccagataaccacttcggctggctgggataccctcctcaaccccatgctg
gaggcaaaagaacactgcaactcctcctcccaagacagctgtcagcagccgcagatagcc
gtcgtctacttcgtcagttacatcatcatctccttcctcatcgtggtcaacatgtacatc
gctgtgatcctcgagaacttcaacacagccacggaggagagcgaggaccctctgggagag
gacgactttgaaatcttctatgaggtctgggagaagtttgaccccgaggcgtcgcagttc
atccagtattcggccctctctgactttgcggacgccctgccggagccgttgcgtgtggcc
aagccgaataagtttcagtttctagtgatggacttgcccatggtgatgggcgaccgcctc
cattgcatggatgttctctttgctttcactaccagggtcctcggggactccagcggcttg
gataccatgaaaaccatgatggaggagaagtttatggaggccaacccttttaagaagctc
tacgagcccatagtcaccaccaccaagaggaaggaggaggagcaaggcgccgccgtcatc
cagagggcctaccggaaacacatggagaagatggtcaaactgaggctgaaggacaggtca
agttcatcgcaccaggtgttttgcaatggagacttgtccagcttggatgtggccaaggtc
aaggttcacaatgactga
DBGET
integrated database retrieval system