Rattus norvegicus (rat): 365155
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Entry
365155 CDS
T01003
Symbol
Prdm9
Name
(RefSeq) histone-lysine N-methyltransferase PRDM9
KO
K20796
[histone H3]-lysine4 N-trimethyltransferase PRDM7/9 [EC:
2.1.1.354
]
Organism
rno
Rattus norvegicus (rat)
Pathway
rno00310
Lysine degradation
rno01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
365155 (Prdm9)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rno03000
]
365155 (Prdm9)
03036 Chromosome and associated proteins [BR:
rno03036
]
365155 (Prdm9)
Enzymes [BR:
rno01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.354 [histone H3]-lysine4 N-trimethyltransferase
365155 (Prdm9)
Transcription factors [BR:
rno03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
365155 (Prdm9)
Chromosome and associated proteins [BR:
rno03036
]
Eukaryotic type
Meiosis-specific proteins
DSB formation-related proteins
365155 (Prdm9)
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
365155 (Prdm9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
PRDM2_PR
zf-C2H2_4
SSXRD
zf-C2H2_11
zf-C2H2_5
zf-C2H2_6
SET
KRAB
zf-C2H2_3rep
Zn_ribbon_SprT
Zn-ribbon_8
zf_PR_Knuckle
zf-met
zf-C2H2_8
Actin_micro
Motif
Other DBs
NCBI-GeneID:
365155
NCBI-ProteinID:
NP_001102373
RGD:
1305247
Ensembl:
ENSRNOG00000021493
UniProt:
P0C6Y7
LinkDB
All DBs
Position
1:complement(65178666..65198851)
Genome browser
AA seq
796 aa
AA seq
DB search
MSRTMNTNKPEENSTEGDAGKLEWKPKVKDEFKDISIYFSKEEWAEMGEWEKIRYRNVKR
NYKMLISIGLRAPRPAFMCYQRQAIKPQINDNEDSDEEWTPKQQVSSPWVPFRVKHSKQQ
KETPRMPLSDKSSVKEVFGIENLLNTSGSEHAQKPVCSPEEGNTSGQHFGKKLKLRRKNV
EVNRYRLRERKDLAYEEVSEPQDDDYLYCEKCQNFFIDSCPNHGPPVFVKDSVVDRGHPN
HSVLSLPPGLRIGPSGIPEAGLGVWNEASDLPVGLHFGPYKGQITEDEEAANSGYSWLIT
KGRNCYEYVDGQDESQANWMRYVNCARDDEEQNLVAFQYHRKIFYRTCRVIRPGRELLVW
YGDEYGQELGIKWGSKMKKGFTAGRELRTEIHPCFLCSLAFSSQKFLTQHVEWNHRTEIF
PGASARINPKPGDPCPDQLQEHFDSQNKNDKASNEVKRKSKPRHKWTRQRISTAFSSTLK
EQMRSEESKRTVEEELRTGQTTNIEDTAKSFIASETSRIERQCGQCFSDKSNVSEHQRTH
TGEKPYICRECGRGFSQKSDLIKHQRTHTEEKPYICRECGRGFTQKSDLIKHQRTHTEEK
PYICRECGRGFTQKSDLIKHQRTHTGEKPYICRECGRGFTQKSDLIKHQRTHTEEKPYIC
RECGRGFTQKSSLIRHQRTHTGEKPYICRECGLGFTQKSNLIRHLRTHTGEKPYICRECG
LGFTRKSNLIQHQRTHTGEKPYICRECGQGLTWKSSLIQHQRTHTGEKPYICRECGRGFT
WKSSLIQHQRTHTVEK
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgcaccatgaacaccaacaagccggaagagaatagtactgaaggagatgcaggg
aaactcgagtggaaacccaaggtcaaagatgagttcaaagacatttccatatacttctcc
aaagaagaatgggcagagatgggagagtgggagaaaattcgctatagaaatgtgaaaagg
aactataaaatgctgatttctataggtctcagagcccctagaccagctttcatgtgttac
caaaggcaggcaatcaagccccagataaatgacaatgaggattctgatgaggaatggaca
ccaaagcagcaagtcagttctccttgggtgcctttccgggtgaagcacagtaaacaacag
aaggaaacacccagaatgccattaagtgataaatctagtgtgaaggaagtatttggaata
gaaaatttgctgaacacaagtggctcagagcatgcccagaaaccagtgtgctcccctgaa
gaagggaatacctccggacagcactttggaaaaaaactgaaactcaggagaaagaatgtt
gaagtgaataggtacaggctgcgagagagaaaggaccttgcatatgaagaggtcagcgag
ccccaggatgatgactacctctattgtgagaagtgccagaatttcttcatcgacagttgt
cccaaccatgggcctcctgtatttgtaaaagacagtgtggtggacagggggcatcccaac
cactcagtcctcagtctgccccctgggctgagaattggtccatcaggcatccctgaagct
ggacttggagtatggaatgaagcatctgatctaccagtgggtctgcactttggtccctat
aagggccagattacagaggatgaagaggcagccaacagtggatactcctggctgatcacc
aagggaagaaactgctatgagtatgtggatgggcaggatgagtcccaagccaactggatg
aggtatgtgaactgtgcccgggatgacgaagagcagaacctggtggcctttcaatatcac
aggaaaatcttctatcggacctgccgggtcatcaggccaggtcgcgagcttctggtctgg
tatggggatgagtatggccaagagctgggcatcaagtggggaagcaagatgaagaaagga
ttcacagcaggaagagaactaaggacagagattcatccttgttttttgtgctctttggcc
ttctcaagtcagaaattcctcactcaacatgtagaatggaatcatcgcacagaaatcttc
ccaggagcatctgcaaggataaatcctaagccaggagatccctgtccagatcagcttcag
gaacattttgattcacagaacaagaatgacaaagccagcaatgaagtcaaaagaaaatcc
aaacccaggcataaatggacaagacagaggatttcaacagccttttccagtactctcaaa
gaacaaatgagatctgaggaaagtaagagaactgtagaagaagagcttagaacaggccag
acaacaaatatagaggacacagccaaatcatttattgcatcagaaacctcaagaattgaa
aggcaatgtgggcaatgtttcagtgataagtcaaatgtcagtgagcaccagaggacacac
acaggggagaagccctacatttgcagggagtgtgggcggggcttttcacagaagtcagac
ctcatcaagcaccagaggacacacacagaggagaagccctacatttgcagggagtgtggg
cggggctttacacagaagtcagacctcatcaagcaccagaggacacacacagaggagaag
ccctacatttgcagggagtgtgggcggggctttacacagaagtcagacctcatcaagcac
cagaggacacacacaggggagaagccctacatttgcagggagtgtgggcggggctttaca
cagaagtcagacctcatcaagcaccagaggacacacacagaggagaagccctacatttgc
agggagtgtgggcggggctttacacagaagtcaagcctcatccggcaccagaggacacac
acaggggagaagccctacatttgcagggagtgtgggctgggctttacacagaagtcaaac
ctcatccggcacctgaggacacacacaggggagaagccctacatttgcagggagtgtggg
ctgggctttacacggaagtcaaacctcatccagcaccagaggacacacacaggggagaag
ccctacatttgcagggagtgtgggcagggccttacatggaagtcaagcctcatccagcac
cagaggacacacacaggggagaagccctacatttgcagggagtgtgggcggggctttaca
tggaagtcaagcctcatccagcaccagaggacacacacagtggagaagtaa
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integrated database retrieval system