KEGG   Ruditapes philippinarum (Manila clam): 132714243
Entry
132714243         CDS       T09557                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB9-like
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
rphi  Ruditapes philippinarum (Manila clam)
Pathway
rphi03020  RNA polymerase
rphi03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:rphi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    132714243
  09124 Replication and repair
   03420 Nucleotide excision repair
    132714243
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rphi03021]
    132714243
   03400 DNA repair and recombination proteins [BR:rphi03400]
    132714243
Transcription machinery [BR:rphi03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     132714243
DNA repair and recombination proteins [BR:rphi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      132714243
SSDB
Motif
Pfam: RNA_POL_M_15KD TFIIS_C Zn_ribbon_recom DUF5886 Ogr_Delta DZR
Other DBs
NCBI-GeneID: 132714243
NCBI-ProteinID: XP_060553038
LinkDB
Position
Unknown
AA seq 127 aa
MELYDQHDDGPGFVGIKFCKECNNMLYPKEDKESRNLLYACRNCDYQQIADNPCIYVNKI
THEVDELTQIIGDVIADPTLPRTEQHPCPRCSHKESVFFQSHSTRALEGMRLYYVCTNPQ
CVHRWTE
NT seq 384 nt   +upstreamnt  +downstreamnt
atggagttgtatgaccaacatgatgatggacctggatttgtaggaataaaattctgtaaa
gaatgcaacaacatgttgtatccaaaagaagacaaagagagccggaatcttttatatgcg
tgcagaaattgtgactaccagcagattgcagacaatccttgtatttatgtgaacaagatc
actcatgaagttgatgagttgacccagataattggtgatgttatagctgatccaactttg
ccacgcacagagcaacatccctgtccaagatgcagtcataaagaatctgtgtttttccag
tcacatagtacaagagcactggagggaatgagactttactatgtatgcaccaatccacag
tgtgttcatagatggactgagtaa

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