Ruditapes philippinarum (Manila clam): 132714446
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Entry
132714446 CDS
T09557
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1-like
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132714446
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132714446
Enzymes [BR:
rphi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
132714446
Messenger RNA biogenesis [BR:
rphi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
132714446
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
AAA_24
TniB
MMR_HSR1
nSTAND3
ATP_bind_1
AAA_22
CbiA
AAA
ATPase
RsgA_GTPase
PduV-EutP
Motif
Other DBs
NCBI-GeneID:
132714446
NCBI-ProteinID:
XP_060553316
LinkDB
All DBs
Position
Unknown
AA seq
421 aa
AA seq
DB search
MTDSEQRVEEFQLDKESELRFEVESGSTVQLELINGKAEIFGSELTSGRKYSFNAGSKVA
VFSWHSCQIKLTGRTEVAYISKETPMVVYLNAHVALEQMREKSEKDETRGPRLLVVGPSD
VGKTTLCNMLLNYGVRMGRAPVFVDLDVGQGQVSIPGTMGAYVVERPADIEEGFTQSAPL
VFHFGHTTPSKNLTLYNLLVSRIADVIEYEINRNKKVNHSGVIVNTGGWVRGSGYDSLKH
AAGSFEVDVIAVMDQERLYSELKRDMPDFVKIILLPKSGGVVERNQTSRSESRDAKVREY
FYGLKNSLFPHTFEVNCVDIKIYKIGAPALPDSCLPLGMKSQDNKTKLVPLTPGTSLLHH
VYSISCADSTEDNILETNIIGFVVFTEFHPEKLSFTVLSPAPHPLPKHILLQTDIQFMDI
Q
NT seq
1266 nt
NT seq
+upstream
nt +downstream
nt
atgacagatagtgaacagagagtagaggagttccagctagataaagagtctgagctgagg
tttgaagtagaatctggatcaactgttcaattggagttaatcaatggcaaggcagagata
tttggcagtgaactgacttctgggcgaaaatattccttcaatgctggctcaaaagttgct
gtattttcatggcatagctgccaaatcaaactgacaggtcgcactgaggtagcttatata
tccaaggagacaccaatggttgtgtacctgaacgcacatgtagcactagaacagatgaga
gagaaatcagagaaggacgaaactagaggtccacggcttttggttgttggaccttctgat
gttggcaaaactacactatgtaatatgttgttgaactatggtgttagaatgggcagagca
ccagtatttgttgaccttgatgtaggacagggtcaggtatctataccaggtacaatggga
gcatatgttgttgaaagacccgccgatattgaggaaggatttacccagagtgcaccacta
gtgttccatttcggtcatactacaccatctaaaaatctcacgttatataacttactggtt
tctcgaatagctgatgtaattgaatatgaaataaatagaaataaaaaagtgaatcatagt
ggagttattgtaaacactggtggttgggtaagaggttcagggtatgattcactcaagcat
gctgccggctcatttgaagttgatgtgatagctgttatggatcaggaaagattatatagt
gaactaaagagggatatgccggactttgttaaaataattctactacctaaatcaggaggg
gttgtagaaagaaatcagacatcaagatccgagtcgagggatgctaaagttcgagaatac
ttctatggactcaaaaactcactttttcctcacacttttgaagtcaattgtgtagatata
aagatatataaaattggagctccagcattgccagattcctgtctaccattgggaatgaaa
tcccaggacaacaaaactaagctcgtccctttaacaccaggaaccagtcttttacatcat
gtatatagtataagttgtgcagattctacagaagacaatattttagaaactaacatcata
ggttttgttgtttttactgagtttcatccagagaagctatcatttacagttttatcacca
gcacctcatcctctacctaaacatatcttattacagactgatattcaatttatggacata
caatga
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