Ruditapes philippinarum (Manila clam): 132726095
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Entry
132726095 CDS
T09557
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2 isoform X1
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03020
RNA polymerase
rphi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
132726095
09124 Replication and repair
03420 Nucleotide excision repair
132726095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rphi03021
]
132726095
03400 DNA repair and recombination proteins [BR:
rphi03400
]
132726095
Enzymes [BR:
rphi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
132726095
Transcription machinery [BR:
rphi03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
132726095
DNA repair and recombination proteins [BR:
rphi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
132726095
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
132726095
NCBI-ProteinID:
XP_060567346
LinkDB
All DBs
Position
Unknown
AA seq
1185 aa
AA seq
DB search
MYGQDEEMFEAEDDNDEITAALWQEACWIVISAYFDEKGLVRQQLDSFDEFIQMSVQRIV
EDTPQIELIAEAQHKAGVVETPPQYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLT
YCAPLYVDITKTVVKPDEDPVETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPL
DPGGYFIINGSEKVLIAQEKMATNTVYVFRQKDSKYAFKTEIRSCLEHSSRPTSTLWVNM
MARGGQGAKKSAIGQRIISILPYIKQEIPIIVVFRALGFVSDRDILEHIIYDFDDPEMME
MVKPSLDEAFVIQEQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCET
KKAYFLGYMVHRLLLAALGRREEDDRDHYGNKRLDLAGPLLAFLFRGLFRNLTKEVRMYA
QKFIDKGKDFNLDLAIKTRTITDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTL
SHLRRLNSPIGRDGKLARPRQLHNTHWGMICPAETPEGGAVGLVKNLALMSYISVGSQPS
PILEFLEEWSMENLEEVAPSSIADATKIFVNGCWVGIHRDAEQLMTTLRKLRREMDIIVS
EVSMIRDIRDREIRIYTDAGRICRPLLIVENQKLLLKQSHIKQLKQREYNNYSLPGDYID
PMCWQDLVASGVVEYIDPLEEECVMLAMSPDILMEKETHYCSTYTHCEIHPAMILGVCAS
IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHGLLYPQKPLVTTRSMEYLRF
RELPAGINSIVAISTYTGYNQEDSVILNQSAVERGYFRSFFFRAYKDSESKKGLDQEEIF
EKPTRETVQGMRPAIYDKLDEDGIIAPGVRVSGDDVLIGKTLSLPANDDELEGTAKKFTK
RDASVFMRRSETGIIDQVMVTINQEGYKFCKIRVRTVKTPQIGDKFASRHGQKGTCGITY
RQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVAANKGEIGDATPFNDSVNVQ
KVSDLLHQYGYQQRGNEVLYNGFTGRKLNAQVFLGPTYYQRLKHMVDDKIHSRARGPLQI
LNRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYRVHLCNICGLIAIAN
LRNQTFECRGCKNKTQISQIRIPYACKLLFQELMSMSIAPRIMVT
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgtacgggcaggatgaagaaatgtttgaagcggaggatgataatgatgagatcactgct
gctctgtggcaagaggcgtgctggattgtcatcagtgcatactttgatgagaaaggttta
gttagacaacaacttgactcgtttgatgagtttattcagatgtctgtacagaggattgtt
gaagatacccctcaaattgaactgattgctgaagctcaacataaagctggtgttgttgaa
acacctccgcaatatttattgaagtttgagcaaatttatttatcaaaaccaacacattgg
gaaaaagatggaagtccaagtcccatgatgccaaacgaggccagacttagaaatctcaca
tattgtgcccctctgtatgtagacattacaaagactgtggttaagccagatgaggaccca
gttgaaactcaacatcagaaaacttttataggaaagataccaattatgttgcggtcaaca
tattgtctattgagtggcctgactgatcgtgatttgactgagttgaatgaatgtccccta
gatccagggggatatttcataatcaatgggtcagagaaggtgcttatagcacaggagaag
atggcaacaaatactgtgtatgtatttagacagaaggactcaaagtacgcctttaagaca
gagattcgatcttgtctagagcattcttcaagacctactagtacactttgggtgaacatg
atggccaggggtggtcagggtgctaagaagagtgctattggtcagagaatcatttctatc
ctaccatatattaaacaagagatcccgatcattgttgtgttccgggctctaggcttcgtg
tccgacagagatattctagaacacattatatacgactttgacgaccccgagatgatggaa
atggtaaaaccatcacttgacgaagcctttgtcatccaggagcaaaatgttgccttaaac
tttattggtgcacgtggtgctaggcctggtgtcacaaaggaaaagcgaattaaatacgca
cgagaaatcttacagaaagaaatgttacctcatgtaggtgtcagtgacttctgtgaaact
aagaaagcttatttcttagggtatatggtacatagattattactggcagctctaggaaga
agagaggaggatgacagagatcactatggtaacaagaggttggatcttgctggtcccctg
cttgccttcttatttagaggactattcagaaaccttacaaaggaagtaagaatgtatgct
caaaagtttattgataaaggtaaagatttcaacttggatttggccatcaagactaggact
attacagatggtctcaagtattcactggctacaggcaactggggtgatcagaaaaaagct
catcaggctcgagctggtgtctcgcaggtgttgaacagacttacatttgcctcaacattg
tcacatttacgacgactgaattcaccgataggacgtgatggtaaacttgcacgtcctaga
cagctacacaacactcactggggtatgatctgtcctgctgaaacaccagagggtggtgca
gtaggtcttgtgaagaaccttgccttgatgtcatatatttctgtaggatctcaaccttca
cctatccttgagttcttggaggaatggagcatggaaaaccttgaggaggtagccccatcc
tccatcgcagatgccaccaagatttttgtgaatggttgttgggttggtatccatagagat
gcagaacagctgatgacaacattgaggaaattgagaagagaaatggacatcattgtctct
gaggtatcaatgatccgagatataagagacagggagattcgtatatatactgatgctggt
agaatctgtcgtccattattgattgtagaaaatcagaaattactcctgaaacaaagtcat
atcaaacagctgaaacagcgggaatataacaactacagtttacctggggattatatagat
cctatgtgttggcaggatctggtagccagtggtgttgtggagtatattgacccgctagag
gaagaatgtgtcatgttagccatgtcacctgacattctcatggagaaggagacacattat
tgttctacatacactcattgtgaaatccatccagccatgatcctcggagtgtgtgcatcc
attattccattcccagatcataaccagtccccacgtaacacctaccaatctgctatgggt
aagcaagctatgggagtatatattacaaactttcatgtgcgtatggatacactagctcac
ggactactttatcctcagaaaccacttgtaactacacgttccatggaatacctgcgcttt
agagaattacctgcaggtattaactcaattgtggctatttctacatacacgggatataac
caggaagattctgtcatcctgaaccagtctgctgtggagagaggttacttcaggtcattt
ttcttccgagcatataaagattccgaatctaagaaaggtctagaccaggaggaaatcttt
gagaagcctactcgagaaactgtacaagggatgagaccagctatatatgacaaattagac
gaggacggtataatagcccctggtgttagagtgtctggtgatgatgtactgattgggaaa
actctctcattacctgccaatgatgatgagttggaaggtactgctaagaaattcactaag
agagatgcaagtgtgtttatgagaagaagtgagacaggtatcattgatcaggtgatggta
acaattaaccaggaaggatataaattttgtaagatccgagtaagaactgtcaagacccct
cagattggtgacaaatttgctagtcgtcatggacagaaaggaacatgtggaatcacttac
agacaagaggacatgccatttacatgtgaaggaatcactccagacattatcattaatcct
cacgctattcccagtagaatgacaattggccatttaatcgagtgcctacaaggcaaagtg
gctgccaacaaaggtgagataggggacgctacacccttcaatgattctgtcaacgtacag
aaagtctcagatctacttcatcagtatggctatcaacagagaggaaatgaggttttatac
aatggatttactggaagaaaattgaatgcacaggtgtttcttggacctacatactatcag
cgtctgaaacatatggtggatgacaagatccactctagagctagaggaccacttcagata
ctcaataggcaacctatggagggtagagctagggatggtggattacgttttggagaaatg
gaacgtgactgtcagatagctcatggtgctgcacaattccttcgggagagattgttcgag
gcttcagatccatacagagttcatctctgtaatatttgtggtctcattgccatagccaac
ctcagaaaccaaacgttcgagtgcagaggttgtaaaaataaaacacagatatctcaaata
cgtatcccatatgcgtgcaagttgctattccaagaacttatgtcaatgagtatagcacct
agaatcatggtgacctga
DBGET
integrated database retrieval system
