Ruditapes philippinarum (Manila clam): 132747885
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Entry
132747885 CDS
T09557
Name
(RefSeq) Fanconi anemia group J protein homolog
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03440
Homologous recombination
rphi03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
132747885
03460 Fanconi anemia pathway
132747885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rphi03400
]
132747885
Enzymes [BR:
rphi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
132747885
DNA repair and recombination proteins [BR:
rphi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
132747885
FA (Fanconi anemia) pathway
Downstream FA components
132747885
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
Motif
Other DBs
NCBI-GeneID:
132747885
NCBI-ProteinID:
XP_060593398
LinkDB
All DBs
Position
Unknown
AA seq
1224 aa
AA seq
DB search
MSSPDERKLTISGVKVIFPCKPYPSQFGMMDRVIKGLERKQNSLLESPTGSGKSLALLCS
ALAWQVAQNEKITKENMNADSVGCSKPCQCRASDAGRSTEYSPESKSGYTNKAEGGKVID
VSDEEMNGQGDDDNDDDDFKPSAKIRTPIIGQGKGKKRRHLGIQYEDEPDCCTDNPPVKC
TCNTSGPTEAMKKQKLPKIYFGTRTHKQIAQITRELKKTAYHDARMVILASREYTCIHPE
VTIQKNKSEGCRERLDIHGQGCKFNDKSKRVFLSQRQLQDELPTAWDLEDLVSSCTKKKA
CPYFVTRNLKEGADIIFCPYNYLIDPLVRKSMDITLKDQIVILDEAHNIEDCARDAASGS
VTTDQITQSILNLQQLMEHNIKYVEHLKLRNMLESLLNFIEGNNSNLDQSDYDTSYKVWS
GFDIVVRLKGIGLGPDSFQEYQRCFEQAVAQNDDEAIAVRDRRNKEVKMSSNTQKILEQL
FQILDYMYRDDLKFVEDYRVAIMKSMQYVSNRDTGDRWLGKNRRGGSRIVVFTLNFWCMN
PAVAFSDFSSCRNVVLSSGTLSPMSSFASELGTPFPIQLEANHIIEDKQVFVGAIGVGPS
GNQLQAVYRNMETFTFQDELGNLIHQVCTKVPHGVLCFLPSYRALEKFIDRWRLTGLWNK
LSTRKRVMVEPRAADREDFDGMMKAFYEVVKGDLYNPYLDEAECNDDDSEIDGALFFAVC
RGKVSEGMDFADDNARAVITVGIPYPSFKDVQVKLKREYNDKHKIDRGLLSGGDWYEIQA
FRALNQALGRCIRHRKDWGALIIVDDRFVKRTEKYCKSLSRWVRSKVQTFDVFSDFLTSM
SNFTEKMIKEMPKVSPDTSFIPSTPCDDRRDSVYKRHSLDNSYLNSTIQASPYFTSPPLS
QSPDLQNLFRTPETSSKRRSLTSPAVPVFPGVTSPTIQQQVLTGVTSLNIQQQILNVINS
GTGPKDQPYYIIVNKGRNQQMPAQMLSMVPPIVPLTQAAGQQVVLNMPGTGQHQTVLLTM
PQLPVQGTNLPQSATIPGTSLKSNFRGGNQLDKTNSTDGIKSENVSKEEKKADIVFTLGS
STLSAEEQLKKFVSSSQAPRNQAYYVVVNKGETNERAFFIEPNKKGKSKPNTEKKIEAEK
TDDSLVKTLDTVKTEEDKKPVKVEQEVVVPDSSTGDPEPQNKFLKFCQLPKTPAKVPVAA
VTPQRQTDQEIKTETVDSVKNRTR
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgtctagccctgatgaaagaaaactgaccatcagtggggtcaaggtgatatttccatgc
aaaccttatccctctcagtttggtatgatggatagagtgatcaagggattggagagaaaa
cagaacagtttattggagagcccaacaggaagtggtaaaagtctagctctgctgtgttca
gcattggcctggcaggtagcacagaatgagaaaataaccaaggaaaatatgaatgctgat
tcagttggctgtagtaaaccatgccagtgtcgtgcctctgatgctgggagatctacagaa
tattcacccgagtccaaatctggctacacaaataaagccgaaggtggcaaagttatagat
gttagtgatgaggagatgaatggacaaggagatgatgataatgatgatgatgattttaaa
ccttcagctaagataagaacaccaatcataggacagggtaaaggaaagaagcggagacat
ctaggtatacagtacgaggatgaaccagactgttgtaccgataatccacctgtaaaatgt
acctgtaatacaagtggcccaactgaggcaatgaaaaaacaaaagttaccaaagatatat
tttggcacacggacacacaaacagattgctcagataaccagagagttaaaaaagactgcc
taccatgatgctagaatggttatattagccagtagggagtatacatgtatacatccagag
gtgaccatacaaaagaacaagagtgagggatgtagagaaaggcttgatattcatggtcaa
ggatgtaagttcaatgacaagtcaaagagagtgtttctatcacagagacagttacaggac
gaactacctacagcctgggatcttgaggacttggtgtcatcttgtaccaaaaagaaggca
tgcccttattttgtgacgaggaatctcaaagaaggcgctgatattatattttgtccttac
aactacctcattgatccacttgttagaaaaagtatggatataacattgaaggatcagata
gtgatattagacgaggctcacaatatagaggactgtgcgagggatgcggctagcggtagt
gtaaccactgaccagatcacacagtctatattaaatctacagcaacttatggagcacaac
atcaagtatgtagagcatcttaaactaaggaacatgttggagagcttgttaaacttcata
gagggaaacaactccaacttggatcagtcggattacgatacctcgtacaaagtttggtca
ggatttgacattgttgtacggttaaagggaataggtcttggacctgacagtttccaggaa
tatcagagatgttttgagcaagctgtagcccagaatgatgatgaggctatagcagttaga
gacaggagaaacaaggaggtaaagatgagcagtaatacacagaaaatactggaacaactc
ttccagatcctagattatatgtacagagatgatctcaaatttgttgaggattacagggta
gctattatgaagtcaatgcagtatgtttcaaacagggacacaggtgacagatggcttgga
aaaaataggagaggtggatcaaggatagttgtgttcacattgaacttctggtgtatgaac
cctgctgtggcattttcagacttcagtagctgtagaaatgttgtgttaagcagtggtacc
ctatcaccaatgtcttcttttgcctcggaactcggtaccccgttccctatacagctagaa
gctaaccatattatagaggataaacaggtatttgtaggagctataggtgttggaccttct
ggtaaccagttacaagctgtatacagaaacatggaaacgtttaccttccaagatgaactg
ggaaatttaattcatcaagtttgcactaaagttccacatggcgtcttgtgtttcctaccg
tcctacagagcactggagaaatttatagataggtggaggcttacaggattatggaataag
ttgtcaactcgtaaacgtgtaatggtagaacctagagcagctgatagggaagattttgat
ggcatgatgaaagcattctatgaggttgtcaagggagatctatataatccttatctggat
gaagctgagtgtaatgatgatgactcggagatagatggcgctctattctttgctgtatgc
cgcggtaaagttagcgaggggatggattttgctgatgacaatgccagagctgtcattaca
gttggtataccttatcctagctttaaagatgtccaggtgaaactaaagagagaatacaac
gacaaacataagattgatagaggactgctaagtggaggtgactggtatgaaatccaggca
tttagggcattaaaccaggctctaggaaggtgtataagacacagaaaagactggggagcc
ttgatcattgttgatgatagatttgttaaaagaacagaaaaatattgcaagagtttgtca
agatgggtaagatcaaaggtacagacatttgatgtgttctctgactttctcacatccatg
tcaaactttactgagaaaatgatcaaagaaatgcccaaagtgagtccagacacatcattt
attcccagtacaccatgtgatgacagaagagattctgtttataagagacattcactagat
aattcatacttaaatagtacaatacaggcttcaccttatttcacaagtccaccattgagt
cagtctccagatttgcaaaatctatttagaactcctgaaacctcaagcaagagaagatca
ttaactagcccagctgttccagtatttcctggagttacttcccctacaatacagcaacag
gtgcttacaggagtaacctcccttaatatacagcagcagattctgaatgtgattaattca
gggacaggaccaaaagatcagccatattacattattgtaaacaagggacgcaatcagcag
atgcccgcccagatgctatcaatggttcctccaattgtacccttaacacaagctgcaggt
caacaagtggtattgaacatgcctggaaccggtcagcatcaaactgttttactgacaatg
ccccaacttccagtgcagggaaccaacttgccacagtctgccactattccgggaaccagt
ctaaaatctaatttcaggggaggtaatcagctggacaaaacaaattcaacagatggcata
aaatcagaaaatgtgtctaaagaagaaaagaaagcagatatagtgttcactcttgggtca
agcacacttagtgcagaagaacaactgaagaaatttgttagttcaagtcaagctccaaga
aatcaggcctattatgttgttgttaataaaggggaaacaaatgagagggcattctttatt
gaaccaaacaaaaaaggaaaatctaaacctaacacagaaaagaaaattgaagcagagaaa
actgatgacagtctagttaaaacactagatacagtcaaaacagaggaggacaaaaaacca
gtcaaggtagaacaggaagtggtagtgcctgattcttctacaggagatccagaacctcag
aacaagttcctaaaattttgccagcttccaaaaaccccagctaaagtccctgtggcagct
gttacacctcagagacaaactgaccaggaaatcaaaacagaaactgttgactctgtgaaa
aatagaaccaggtag
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integrated database retrieval system
