Ruditapes philippinarum (Manila clam): 132760330
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Entry
132760330 CDS
T09557
Name
(RefSeq) LOW QUALITY PROTEIN: threonylcarbamoyladenosine tRNA methylthiotransferase-like
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rphi03016
]
132760330
Enzymes [BR:
rphi01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
132760330
Transfer RNA biogenesis [BR:
rphi03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
132760330
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
TraT
Cmyb_C
Motif
Other DBs
NCBI-GeneID:
132760330
NCBI-ProteinID:
XP_060608267
LinkDB
All DBs
Position
Unknown
AA seq
558 aa
AA seq
DB search
MPLSGDVPLEDIEDIVTGETGTDIRAGNKKHVVPRARKHKTEVATEKVNADSIIPGTQKV
YVKTWGCSHNNSDSEYMAGQLAAYGYKIVDEKKNADLWLLNSCTVKSPAEDHFRNEINLA
KQLEKYIVIAGCVPQGQPKGDYMQGLSVVGVQQIDRVVEVVEETLKGHNVRMLGQKKASG
KKVGGASLNLPKIRKNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIVARAKQSF
EEGVVEIWLTSEDLGAYGHDIGVTLPQLLWQLVEVIPEGARMRLGMTNPPYILEHLPEIA
KILQHPRVYSFLHVPVQSASDSVLMDMKREYCQADFRHVADFLKQQVPDVTIATDLICGF
PTETEDDFEETMQLVRDYKFPSLFINQFFPRPGTPAANMPRIPPPDVKKRTKRVSELFQS
YHPYTHKLGEIQEVLVTEISHDKQYYVGHNKSYDQVLVPQDENLMGKMVSVEITETGKHF
MKCRLVKDGEVRRPVSVPPPLPKGQVSGFKQTDVVITSKGIWFLRCFYGSYAYSSGLASI
WTSSTVYNVNTIMYLLMT
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgcctctctctggagatgtacctctagaagatattgaagatatagtgacgggggaaaca
gggacagatattagagcagggaataagaaacatgttgtacctcgagctaggaaacacaag
actgaagtggcaacagaaaaagttaatgctgatagtatcataccaggaacacagaaagtt
tatgtaaaaacatggggctgctcacataataattctgattctgaatatatggctggtcag
ctcgcagcatatggatacaaaattgttgatgagaagaagaatgcagacctgtggttgttg
aacagttgtactgtgaaaagtccagcggaggaccactttagaaatgagataaatttggct
aaacaactggagaaatatattgtgatagcaggatgtgtaccacaaggtcaaccaaaagga
gactatatgcagggattgagtgtagtaggtgtacagcagatagaccgggtagttgaagtt
gttgaagaaactttaaaaggacacaatgttagaatgttgggccagaaaaaggcatctggg
aagaaagtaggaggagcatccctaaatctaccgaagattaggaaaaatccactcatagaa
ataattgcaattaacacaggatgtttgaatcagtgtacatactgcaaaactaaacatgct
cgtggtgaattaggcagctaccctccagaagaaattgtggcacgtgcaaaacaatccttt
gaagagggtgttgtagagatttggttgacctctgaggaccttggggcctacggtcatgac
attggggtgacattacctcaattgctatggcaactggttgaggtaatccctgaaggagca
agaatgaggcttggcatgactaaccctccttacatattagaacatcttccggaaatagct
aaaattttgcagcacccacgagtttactcatttctacatgtacctgtgcaatcagcctct
gatagtgtacttatggacatgaagagagaatattgccaggctgacttcagacatgtggca
gactttctcaaacaacaagtcccggatgtaaccatagcaacagatttgatatgtggattt
ccgacagagacagaggatgattttgaggaaactatgcagcttgttagagattacaaattc
ccaagtttatttatcaatcagtttttcccacgtcctggaacaccggcagcaaacatgcct
cggatacctccaccagacgttaagaagagaactaagagagtgtcagaattattccagtca
tatcatccctatacccacaagcttggtgaaatacaagaagtgctagtcacggaaatctca
catgataaacagtattacgtaggccataacaagtcttatgatcaggtgctggtaccccaa
gatgagaacttgatgggaaagatggttagtgtagagattactgagaccgggaaacatttc
atgaagtgtcgactagtgaaggatggagaggtcaggagacctgtatcagtacccccacca
ttacctaaaggtcaagtttcaggatttaaacagacggatgttgttatcacaagtaaagga
atctggtttcttcgctgtttctatggtagttatgcttatagcagtggtttggcgagtata
tggactagttcaacagtttataacgtgaatactataatgtacttgttgatgacttaa
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