Roseivirga spongicola: T7867_09260
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Entry
T7867_09260 CDS
T09626
Symbol
rfaD
Name
(GenBank) ADP-glyceromanno-heptose 6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
rsr
Roseivirga spongicola
Pathway
rsr00540
Lipopolysaccharide biosynthesis
rsr01100
Metabolic pathways
rsr01250
Biosynthesis of nucleotide sugars
Module
rsr_M00064
ADP-L-glycero-D-manno-heptose biosynthesis
Brite
KEGG Orthology (KO) [BR:
rsr00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
T7867_09260 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
rsr01005
]
T7867_09260 (rfaD)
Enzymes [BR:
rsr01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
T7867_09260 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
rsr01005
]
Core region
T7867_09260 (rfaD)
BRITE hierarchy
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
RmlD_sub_bind
3Beta_HSD
NAD_binding_4
Polysacc_synt_2
ThiF
Ldh_1_N
Motif
Other DBs
NCBI-ProteinID:
WPZ12298
LinkDB
All DBs
Position
2098385..2099350
Genome browser
AA seq
321 aa
AA seq
DB search
MIVVTGAAGFIASALVSKLNSEGFNNIVLVDDFSFEEKNLNLEGKNYVDRVERESFFDWL
DSNGNRVEFIFHLGARTNTAEFDHSLLTKLNIDYSKMVWKYCIKYQIPLVYASSAATYGD
GNNGYKDDINALGNLEPLNPYGWSKNEFDKWVIDQKEQPFFWAGLKFFNVYGPNEYHKGR
MASVVYHTFNQVKHTGEMKLFKSHNSSYQHGEQLRDFVYVKDVVEVCFFLMNHRKNSSIY
NLGSGEARTFLDLAKATFNGMGVDENISFIDIPEDIRDKYQYYTQADMSKLKSIGYSKEF
TSLEDGVSDYVKNYLVQNKYY
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atgatagtagttacaggagcggctggttttattgctagtgctttagtctctaagttaaat
tcggagggctttaacaatattgttctggttgacgatttctcttttgaggaaaagaacctg
aacttggaggggaagaattatgtggatagagttgaaagagagtcttttttcgactggctt
gattcgaatggtaatagggtagaattcatttttcatctaggtgcgagaactaatacagct
gaatttgatcatagccttctgacgaagcttaatattgattactccaaaatggtttggaag
tactgtattaagtatcaaatacctttggtttatgcctcctctgcagccacttatggcgat
ggtaacaatggttacaaagacgatataaatgcattaggcaatctagagcctttaaaccct
tatggttggtctaaaaatgaatttgataaatgggttatagatcaaaaggaacaacctttc
ttttgggcggggttgaagttttttaatgtttatggtcctaatgagtatcataagggaaga
atggcttcggttgtatatcataccttcaatcaggtaaagcatactggcgaaatgaagcta
tttaaatcacataattcatcatatcaacatggtgaacagttgagggattttgtatatgta
aaggatgtggttgaagtatgtttttttcttatgaatcatcgtaagaattcttcaatttat
aatttaggttctggagaagcgcggacctttttggatttggccaaagcaaccttcaatgga
atgggagtagatgagaatatttcttttattgatattccggaagatattagagataaatac
cagtattatacacaagcagatatgtctaagttaaagtctattggctacagcaaggagttt
acctctctagaagatggagtttctgattatgtgaaaaattatttagttcagaataaatat
tattga
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