Rhodovulum sulfidophilum: NHU_03401
Help
Entry
NHU_03401 CDS
T04143
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
rsu
Rhodovulum sulfidophilum
Pathway
rsu03030
DNA replication
rsu03410
Base excision repair
rsu03420
Nucleotide excision repair
rsu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rsu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NHU_03401 (polA)
03410 Base excision repair
NHU_03401 (polA)
03420 Nucleotide excision repair
NHU_03401 (polA)
03440 Homologous recombination
NHU_03401 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rsu03032
]
NHU_03401 (polA)
03400 DNA repair and recombination proteins [BR:
rsu03400
]
NHU_03401 (polA)
Enzymes [BR:
rsu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NHU_03401 (polA)
DNA replication proteins [BR:
rsu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NHU_03401 (polA)
DNA repair and recombination proteins [BR:
rsu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
NHU_03401 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NHU_03401 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
HHH_5
NYN_YacP
Motif
Other DBs
NCBI-ProteinID:
BAQ70535
UniProt:
A0A0D6B6R0
LinkDB
All DBs
Position
complement(3556394..3559204)
Genome browser
AA seq
936 aa
AA seq
DB search
MTEGFGKGCHLHLIDGSAFIFRAFHALPPLTRKSDGLPIGAVAGFCNMIHKYVQDNRGPD
APTHVAVIFDKGSHTFRNDLYDLYKANRDEMPENLRPQIPLTREATRAFNIACIEKENYE
ADDIIATYARQAVEKGGRVTIVSSDKDLMQLVGNGVEMLDAMKNRRIGVEEVEAKFGVGP
ERVVDVQALAGDSVDNIPGAPGIGIKTAAQLIQEFGDLQTLLDRAEEIKQPKRRQTLIEN
RAQIELSMKLVTLDAETPLDETLDDLEVKEPDAETLLGFLAEMEFRTLLKRVADGLGAEP
PTIPEASPAAADPADGTAPAALPFEPEAYECVRDAAALEDWIGRAWARGWVAVDTETTGL
DEMRVDLVGISLAVEPGQACYIPLGHREGEGDLFGSAALAEGQMPMDEALSLLKPLLEDP
AVMKIGQNMKYDAKILARHGIAVAPIDDTMLMSYAMHAGLHGHSMDALSERYLGHQPIPI
KTLLGSGKSQITFDKVPVAEAVKYAAEDADVTLRLAQLFKPQLHRAKVATVYETLERPLV
PVLAEMEMTGIKVDRDTLSRMSNAFAQKMAALEAEIHELAGESFNVGSPKQLGEILFDKM
SLSGGKKGKTGAYGTGADVLEDLAAEGHDLPARVLDWRQLSKLKSTYTDALQDHINPETG
RVHTSYVITGAVTGRLSSTDPNLQNIPVRSEEGRRIREAFVAEEGKVLLSLDYSQIELRI
LAHVAGIDALKAAFREGQDIHAMTASEMFDVPMAEMTPEIRRRAKAINFGVIYGISGFGL
ARNLRIPRSEAQGFIDRYFERFPGIRDYMEATVAFAKEHGHVETLFGRRIHTPEIGAKGP
QAGFAKRAAINAPIQGTAADIIRRAMIRMPAAIAGLPAKMLLQVHDELIFEVEAGAAADV
AARVREVMEGAALPVVALDVPLVVDAGQGQNWAAAH
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaaggcttcggcaagggctgccatctgcatctgatcgacggctcggccttcatc
ttccgcgcctttcacgcgctgccgcccctgacgcggaaatccgacgggctgccgatcggc
gcggtcgcgggcttctgcaacatgattcacaaatatgtgcaggacaatcgcggccccgac
gcgccgacccatgtcgcggtgatcttcgacaagggcagccataccttccgcaacgatctc
tacgatctctacaaggccaaccgggacgagatgcccgagaacctgcggccgcagatcccg
ctgacccgcgaggccacgcgcgccttcaacatcgcctgcatcgagaaggagaattacgag
gccgatgacatcatcgccacctatgcacggcaggcggtcgagaagggcgggcgggtcacc
atcgtcagctccgacaaggacctgatgcagctggtcggcaatggcgtcgagatgctggac
gcgatgaagaacaggcggatcggcgtcgaggaggtcgaggccaagttcggcgtcgggccc
gagcgggtggtcgacgtgcaggcgctggcgggcgattccgtcgacaacattcccggcgcg
cccgggatcgggatcaagaccgcggcccagctcatccaggaattcggcgatctgcaaacg
cttctggaccgcgccgaggagatcaagcagcccaagcgccgccagaccctgatcgagaac
cgcgcccagatcgagctgtcgatgaagctggtgacgctcgatgccgaaacgcccctggac
gagaccctcgacgatctcgaggtgaaggagccggatgccgagaccctgctggggtttctt
gcagagatggaattccgcaccctgctgaagcgggtcgccgacggtctgggcgccgagccg
cccacaatccccgaggcaagccccgccgcggccgacccggccgatggcacggcaccggcg
gcgctgcccttcgagcccgaggcctatgagtgtgtgcgcgacgccgccgccctcgaggac
tggatcgggcgggcgtgggcgcggggctgggtcgcggtcgataccgagaccaccgggctc
gacgagatgcgggtggatctggtgggcatctcgctggcggtcgagccggggcaggcctgc
tacatcccgcttggccatcgcgagggcgagggcgatcttttcggctcggcggcgctggcc
gaggggcagatgccgatggacgaggcgctgtctttgctcaaaccgctcctggaagatccg
gcggtgatgaagatcgggcagaacatgaaatacgatgccaagatccttgcccgtcacggc
atcgcggtggcgccgatcgacgataccatgctgatgtcctacgcgatgcatgcggggctg
catggccattcgatggatgcgctgtccgaacgttatctcgggcaccagccgatcccgatc
aagacgctgctgggctcgggcaagtcgcagatcaccttcgacaaggtgccggtcgccgag
gcggtgaaatacgccgccgaggatgccgatgtgacgctgcggctggcgcagcttttcaag
ccgcaactgcaccgggcgaaggtcgcgaccgtctacgagacgctcgagcgcccgctggtg
ccggtgctggccgagatggagatgaccggcatcaaggtcgaccgcgacacgctttcacgg
atgtcgaatgcctttgcccagaagatggccgcgctcgaggccgagatccacgagctggcg
ggcgagagcttcaatgtcggcagccccaagcagctgggcgagatcctgttcgacaagatg
agcctgtcgggcggcaagaagggcaagaccggcgcctatggcaccggcgccgacgtgctg
gaggatctggccgccgagggccatgacctgcccgcaagggtgctggactggcgccagctt
tccaagctgaaatcgacctatacggatgcgctgcaggaccacatcaatcccgaaacgggg
cgcgtgcacacctcttatgtgatcaccggcgcggtgacggggcgtctgtcctcgaccgat
ccgaacctgcagaacatccccgtgcgcagtgaagaggggcgccgcatccgcgaggctttc
gtggccgaggagggcaaggtcctgctgagcctcgactattcgcagatcgagctgcgtatc
cttgcccatgtcgccgggatcgatgcgctcaaggcggcgttccgcgagggtcaggacatc
catgccatgaccgcctccgagatgttcgacgtgccgatggccgagatgacgcccgagatc
cggcgccgcgcgaaggcgatcaatttcggggtgatctacggcatttccggcttcggcctc
gcgcgcaacctgcgaattccgcgcagcgaggcgcagggtttcatcgaccgctatttcgag
cgtttcccggggatccgcgactacatggaggccaccgtggcttttgccaaggagcacggc
catgtcgagaccctgttcggccggcgcatccacacccccgagatcggcgccaaggggccg
caggcgggctttgccaagcgtgcggcgatcaacgcgccgatccagggcaccgcggccgac
atcattcgccgcgccatgatccggatgcctgccgcgatagcagggcttcctgccaagatg
ctgctgcaggtccatgacgaactgatcttcgaggtcgaggcgggcgcggcggcggacgtc
gccgcgcgcgtgcgcgaggtcatggaaggggccgccctgccagtggtcgcgctcgatgtg
ccgctggtcgttgatgcggggcaggggcagaactgggccgcggcgcattga
DBGET
integrated database retrieval system
