Raphanus sativus (radish): 108813429
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Entry
108813429 CDS
T06014
Name
(RefSeq) uncharacterized protein LOC108813429
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
108813429
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rsz03400
]
108813429
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
108813429
DNA repair and recombination proteins [BR:
rsz03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
108813429
FA (Fanconi anemia) pathway
Downstream FA components
108813429
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
Motif
Other DBs
NCBI-GeneID:
108813429
NCBI-ProteinID:
XP_018441525
UniProt:
A0A6J0K0L8
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All DBs
Position
1:complement(9051524..9058968)
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AA seq
1249 aa
AA seq
DB search
MVCVTTNSESKQTKTPKNVYQIGGLQVEFPYQPYGTQLAFMSRVISTLDRAQRDGHCHAL
LESPTGTGKSLSLLCSVLAWQQNHKSRILKGNLSHSSKAAPEAAADPLNHGGGFIPETQP
SDTPMPSNKEPAEAATKKKPKVPTIYYASRTHSQITQVIREYKKTGYRVPMAVLASRKHY
CTNRHVHGKENVDEECRLLLKDKTNIQCAEFKNVSKITAHPSLQQRGHNEIHDIEDLVKV
GKSVRGCPYYAAWSLAENAELVFCPYSYIVNPVIRAGVEVDLKGAIIIFDEAHNMEDIAR
EAGSINLDEETLFKLQSELEQMSVAQPMIYQPLCEVVEGLISWIGRKKDSLEKRDFQHYF
SSWTGDKALKELEESNISRECFPILLNCFTKAIRTSKEAEMESDMLHLSGISVLTLEELF
ASLTYFFSRNGSHILDYQLGLQRSTKRGDSSGTWTHTFSLWCMNPSVVFKDLADLSLSII
LTSGTLSPMNSFSSELGMQFGTCLEAPHVIDINLQVWAGAISNGPGNYPLNGSYKTADSY
SFQDALGKSLEEVCTIVPGGSLVFFPSYKLMEKLCTRWRETGQWSRLCLKKDLFVEPRGG
AQDEFDSVLKGYYDSIRGKNRLIGRNRRLKKAGLVKTEAQDDSKKGAAFFAVCRGKVSEG
IDFADDNARAVIIVGIPFPNLHDLQVGLKKKYNDMYKSSKNLLGGSDWYCQQAYRALNQA
AGRCIRHRFDYGAIIFLDERYREQRNRASISKWLRQSIKLYDNFEESMEGLRSFFNGAKE
RVDSKMLGSQDHTVEHNFSSENLRKECIKTENQFQKECDHAELKDIAGKKVLKVEDYTSS
NAKYHFMTEDWKSKIAEGSRSMRLSGVNYGTSISQSSSVGDIPTQTFIQVKEEEVIDLEC
EVQPEPGCCEASSVTNCDEDPETSFVKEISGMFKGISGASPCSCSKNESSSPATSLRSPR
SPDEFLKQRKSTGNLRKSPLGAESPLNMSVNSHALKRRKFTSSPVIDLEEEEENSSAPST
RPTDHTSLTRRIEFGLGSTESRSQNDNVYAFPEVNQRVMKISCSLCRSSLGHPESHSHPK
CVLTSSSKTYLLSLLKETLGTGPEEMPTSVSVVMTDCALVNQRLCRSSESAKGQGIWCQQ
DGCVFNTIFCPFCSIPNTCLGVQVKATDSSNVQFLSKILFFADQVDVTVDDPSKETALKH
EGSPDVTKTEPDKIDVFKSIERFAYSPTQQQNSGGWRSTKSKLRLPRRS
NT seq
3750 nt
NT seq
+upstream
nt +downstream
nt
atggtttgcgtaaccaccaattcggaatcgaaacaaaccaaaacccccaaaaacgtctac
caaatcggaggcctccaagtcgagttcccttaccagccctacggcacccagctcgccttc
atgagccgcgtcatctccacgctcgatcgcgcccagagagacggacactgccacgcgctg
ctcgagtctcccaccggcacgggcaaatccctctccctgctctgctcggtgctcgcttgg
cagcagaaccacaaatcgcggattctgaaagggaacttatcgcattcttccaaagctgcg
cccgaggcagccgccgatccgttgaatcatggaggcgggttcattcccgaaacgcaaccc
tcagatactcctatgcctagcaataaggaaccagctgaagctgcaactaaaaagaaaccc
aaagttcctaccatttactatgcttcacgaactcattctcagattacacaagtcattcgt
gagtataagaagactggttacagagttcccatggctgtattggcttcaagaaagcattac
tgcactaatcgtcatgtacatgggaaagagaatgtagatgaagaatgtcggttgcttcta
aaagataagacaaacatacaatgtgctgagttcaagaacgttagtaaaatcacagctcac
ccatcacttcagcagagaggtcacaatgagattcacgatattgaagatcttgtcaaagtt
gggaaaagtgttagaggctgtccatattatgctgcctggtcattggcggagaatgcagaa
ctggttttttgcccttattcatacatagttaatcctgtcattcgagcaggagttgaagta
gatctgaaaggagcgattataatatttgatgaagcacacaatatggaagacattgctcgt
gaagcaggaagcattaacttggacgaagagactcttttcaaattgcagagtgaactggaa
cagatgagcgtggcccagccaatgatatatcaacccttatgtgaagtagtagagggattg
ataagctggattgggagaaaaaaggattctctagaaaaacgtgattttcagcactatttc
tctagctggactggagataaagctttaaaagagctcgaggaatctaatattagtcgggag
tgcttcccaatcttattgaattgctttacaaaggcgattagaacatcaaaggaagcagaa
atggaatcagatatgcttcatttaagtgggatctctgttttgacactagaagagttgttc
gcttcacttacatacttcttttcaagaaatggaagtcacatcttagattaccaactgggt
ttacaacgctctactaaaagaggagattcttctggtacctggacgcatactttcagcttg
tggtgtatgaatccgtccgttgttttcaaagacttagctgatctttctttatccatcatt
ttaacatccgggactttgtcaccgatgaattctttctcatctgaacttgggatgcagttt
ggcacttgtttagaagccccacatgtgattgatattaatctgcaggtgtgggctggtgca
atctccaatggtcctggtaattatcccctaaatggaagttataaaacagctgattcatac
tcattccaggatgcgctagggaaatcgttggaagaagtttgcactattgttccaggtggc
tcgcttgtattctttccaagctataagttaatggaaaagctctgcactcgttggcgtgaa
actggtcaatggtctcggctctgcttgaagaaggacctctttgttgagccgagaggagga
gcccaggatgaattcgattctgttctgaagggttattatgattctatacgcgggaagaac
cgattgataggaagaaatagaagattgaagaaagcggggctagttaaaactgaggctcag
gatgattccaagaaaggagctgcattttttgcagtttgtagaggaaaggtttcagaagga
attgactttgctgatgacaacgccagggcggtcataattgttggcattccgtttccaaac
ttgcatgatcttcaagtcggactaaagaaaaaatataatgatatgtataaatcatctaag
aaccttcttggagggagtgattggtattgccaacaagcctatcgtgctttaaatcaagca
gcagggcgatgtatccggcataggtttgattatggggccatcatatttttggatgagcga
tacagagaacaaaggaacagagcgtctatttcaaagtggctaaggcagtctatcaaactg
tatgataattttgaagaatcgatggaagggttaagatcttttttcaacggtgccaaggaa
cgagtcgacagtaagatgttagggtcccaggatcacactgtcgaacataatttttcttcg
gaaaacctaagaaaggaatgcataaagacggaaaatcagtttcagaaagaatgcgatcat
gcagaattaaaagatatcgcaggcaagaaggtgttgaaagtggaggactatacaagttcg
aatgcaaaatatcattttatgactgaagactggaaatcaaaaatagctgaaggctctaga
tccatgcggctttctggtgtgaactatggaacctccatttctcagtcatcatctgtaggt
gacatacctactcaaacattcattcaagttaaagaggaagaagtcattgaccttgagtgt
gaggtccaacctgagcctgggtgttgtgaggcgtcgtcggtaaccaattgtgatgaagat
ccagaaacatcatttgttaaggaaatctctggtatgttcaaaggtatttctggagccagt
ccatgttcttgctcgaagaatgagagctctagcccagcaacaagtctgagatccccgagg
tctcctgatgaattcctgaagcagcgtaaatctactggaaacttaagaaaatctcctctt
ggagcagagtcacctttgaacatgagtgtaaattcccatgctttgaagagaagaaaattt
acaagctctccagtcattgaccttgaagaagaagaagaaaacagtagtgctcctagtact
agacccacagatcacacaagtttgaccagaagaattgaatttgggttagggagtaccgaa
tcaagatcacaaaacgacaatgtatatgcttttccggaagtgaatcagagagtgatgaag
atatcttgttcactctgcagaagttctttaggtcaccctgagagccactcacatcccaaa
tgcgtgttgacttcgtcttccaaaacgtatttgctgtctctcctgaaagaaacattagga
accggtcctgaagaaatgccaacaagtgtttcagttgtcatgacagattgcgcattagtt
aatcagagactctgcagaagttctgaaagcgcaaaaggtcaaggcatttggtgccagcaa
gatggatgtgttttcaatactatcttttgccctttctgtagtatcccaaatacgtgtctc
ggagtgcaagttaaggctactgattcatcaaatgtccagtttctgagcaaaattttgttc
tttgctgatcaagtagatgtcacagtagatgatccaagcaaggaaacagcgttaaagcat
gagggatctcctgatgtcactaagacagaaccggacaagattgatgtgttcaagtcgata
gagagatttgcatactctccaacgcagcagcaaaattcaggaggatggagaagtacaaaa
tcaaagttgagactaccgagacgcagttag
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