Raphanus sativus (radish): 108837454
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Entry
108837454 CDS
T06014
Name
(RefSeq) exopolygalacturonase clone GBGE184-like
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Module
rsz_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108837454
Enzymes [BR:
rsz01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
108837454
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GFIT
Motif
Pfam:
Glyco_hydro_28
Pectate_lyase_3
Pectate_lyase_4
Motif
Other DBs
NCBI-GeneID:
108837454
NCBI-ProteinID:
XP_056847947
UniProt:
A0A9W3C8Q2
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Position
8:5653374..5655102
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AA seq
414 aa
AA seq
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MASARSLVAKANNTNVGSLILMALVLGSCIANGEYLGGRRNLAAVAGSATVFDITKNGAV
GTGATDSSKAFLNTWIQVCASPTPATLLVPKGEFLAGPVIFAGPCKSKVTVEVQGTITAP
PSGYPTPEWFLFEHVDNVVLTGPGTFHGKGEAVWKADGCGQKANCNLPPTSLKFRNILNL
DISGISSVNAKAFHMFLVKTKNVNVQNIKLTAPAESPNTDGIHLSNAVNVHIADSLIATG
DDCISVGRGSTNVTVERVTCGPGHGLSVGSLGKYPNEENVAGIHFKNCTLKNTDNGLRIK
SWGGSSPSTAVDITYEDIMMTNVKNPIIIDQNYGTRGGDSKVAISNVLFKNVRGTTISKD
EVQIMCSKSVPCKGVSVVDVELNLVGDKGGLGGALCTNANVIFGGKLSFPMCPK
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atggctagcgcaagaagtttggttgccaaggcaaataacactaatgtaggctcattaatc
ttaatggccttggtgttaggttcttgcatagcgaatggtgaatatctcggtggccgccgt
aaccttgccgctgttgccggcagcgctacggtctttgatattactaagaatggagcagtg
ggaactggtgccaccgattcttccaaggcgtttctaaacacatggatccaagtgtgtgcc
agtcccacaccagcaacgctactagttcctaaaggagagttcttggctggtccagtaatt
tttgctggtccatgcaagagcaaagtgaccgtcgaagttcaaggtacaatcaccgctcca
ccaagcggatacccgactcctgaatggttcttattcgaacatgtcgataatgtcgtcctc
accggacccggcacattccacggcaaaggtgaagccgtttggaaagcagatggctgtggt
caaaaggccaattgtaatcttcctccaacgtctctaaaattcagaaacatcttaaatctt
gacatttccggcattagctcggtcaacgcaaaggccttccacatgttcttggtaaaaact
aaaaatgtcaatgtccaaaacatcaagcttactgccccggctgaaagtcccaacaccgat
ggtatccatttgagcaatgcggtcaacgttcacatcgctgacagtttaatagcgacagga
gacgattgtatctcagtcggtcgtggttccaccaatgtaaccgtcgaacgcgtgacttgt
ggccccggacacggcctaagtgtcggtagtcttggtaagtacccgaacgaggagaatgtt
gccggcattcactttaagaactgcaccttaaaaaataccgacaatggtcttagaatcaag
agttggggtggttcgtctccaagcacagctgtggacatcacctatgaagatattatgatg
acaaacgtcaagaaccctatcatcattgaccagaactacggcacaagaggcggagattca
aaagttgcgataagcaatgtgctgttcaagaacgtaagaggaacaacaatttcaaaagat
gaagttcagatcatgtgcagcaaatcagtaccgtgcaaaggagtcagcgtcgttgatgtg
gagttgaacttggtaggtgacaaaggaggtttgggcggagctctttgtactaacgccaat
gttatcttcggtggaaaacttagcttccctatgtgtcccaaataa
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