Raphanus sativus (radish): 108855003
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Entry
108855003 CDS
T06014
Name
(RefSeq) ABC transporter D family member 1
KO
K25819
ATP-binding cassette, subfamily D (ALD), peroxisomal ABC transporter [EC:
7.6.2.4
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz02010
ABC transporters
rsz04146
Peroxisome
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
108855003
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
108855003
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
rsz02000
]
108855003
Enzymes [BR:
rsz01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.4 ABC-type fatty-acyl-CoA transporter
108855003
Transporters [BR:
rsz02000
]
ABC transporters, eukaryotic type
ABCD (ALD) subfamily
Others
108855003
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane_2
ABC_tran
AAA_21
AAA_29
AAA_23
AAA_16
SMC_N
AAA_22
nSTAND1
DEAD
Mg_chelatase
AAA_30
T2SSE
Motif
Other DBs
NCBI-GeneID:
108855003
NCBI-ProteinID:
XP_018484190
UniProt:
A0A6J0NI13
LinkDB
All DBs
Position
4:428040..436418
Genome browser
AA seq
1337 aa
AA seq
DB search
MPSLQLLQLTERGRSLVASRRKSILLAAGIVAAGGAFYLKSRISSPRLDSSRGRSGGDGE
ALEKRTGNNKNAKKATSKKKGGGLKSLQVLTAILLSQMGKMGARDLLALLATVVFRTALS
NRLAKVQGFLFRAAFLRRAPLFLRLISENIFLCFMLSTTHATSKYITGALSLRFRKILTK
LIHSHYFENMVYYKISHVDGRITHPEQRIASDVPRFSSELSELIQDDLTAVTDGILYAWR
LCSYASPKYIFWILAYVLGAGTAIRTFSPSFGKLMSKEQQLEGEYRQLHSRLRTHSESIA
FYGGETREESHIQQKFKNLVTHMSDVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFSG
HLRPDDSTLGRAEMLSNIRYHTSVIISLFQALGTLSISSRRLSRLSGFADRIHELMAVSR
ELSGDDKTSLQRNRSRNYLTEASYVEFSGVKVVTPTGNVLVEDLTLRVEQGSNLLITGPN
GSGKSSLFRVLGGLWPLVSGHIVKPGVGSDLNKEIFYVPQRPYMAVGTLRDQLIYPLTSD
QETVPLTETGMVELLENVDLEYLLDRYRPDKEVNWGDELSLGEQQRLGMARLFYHKPKFA
ILDECTSAVTTDMEERFAAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHYKRD
DSAPLTDAGVDSAKISENDRQNDAMVVQRAFAAARKESATTNSKAQAYLTQSIAKSPVVD
KSVVLPRFPQPRTSPRALPLRVAAMLNTLIPTLFDKQGGQLLLVACLVVSRTLISDRIAS
LNGTTVKYVLEQDKAAFVRLIGLSVIQSSASAVIAPSLKHLTQRLALGWRIRLTQHLLRN
YLRNNAFYKVFHMSGNTIDADQRLTRDLEKLTTDLSGLLTGMVKPSVDILWFTWRMKLLT
GQRGVAILYTYMLLGLGFLRRFAPDFGDLAGEEQQLEGKFRFMHERLNTHAESIAFFGGG
AREKAMVDTKFRALLDHSLMLLKKKWVYGILDDFVTKQLPNNVTWGLSLLYALEHKGDRA
LVSTQGELAHALRYLASVVSQSFMAFGDILELHKKFLELSGGINRIFELDEFLDASQSGV
TSENHTSRLDSQDRISFSEVDIITPAQKLMASQLSCEIIAGKSLLVTGPNGSGKTSVFRV
LRDIWPTVCGRLAKPSLDIKELGSGNGIFFVPQRPYTCLGTLRDQIIYPLSKDEAEKRAA
KFYYTNNGESSTEAGSVLDAHLKTILENVRLVYLLERDESGWDATTNWEDILSLGEQQRL
GMARLFFHRPKFGILDECTNATSVDVEEQLYRVAKDMGVTFITSSQRPALIPFHSLELRL
IDGEGNWELRSIEQTAE
NT seq
4014 nt
NT seq
+upstream
nt +downstream
nt
atgccttctctccagctattgcagttaactgagcggggtcggagtctcgttgcttcaaga
cggaaatctatactgcttgcggctgggatcgtggctgctggtggagctttttacttaaaa
tcaaggatcagctcccctaggcttgattcttcccgtgggcggagtggtggtgatggtgaa
gcattggaaaagcggacaggaaacaataagaatgcaaagaaagccacatcaaagaagaaa
ggaggaggattgaagtctcttcaggttctcactgctattctcttgtctcagatgggaaaa
atgggtgccagggatcttctcgcactactcgccactgtggttttcagaactgctttgagc
aatagattggcgaaagttcaaggtttcctattccgtgccgctttcttaaggcgtgcccca
ctgtttctacgtcttatctccgagaatattttcttgtgtttcatgctatcgactacgcac
gctacgtcaaagtacataactggggccttgagtttgcgtttcagaaagatattgacgaaa
cttatccattcacattactttgagaatatggtatactataaaatatcacatgtggatggt
cggattacgcacccggagcagcgaattgccagcgatgtaccaagattctcctcagaattg
agcgagcttatacaggatgatttgacagcagttactgatgggattttgtatgcatggcgc
ctttgttcatatgctagtccaaaatacatcttctggatactggcatatgtactgggagcc
ggtactgcgataaggaccttttctccttcttttggcaaattgatgtccaaagagcagcag
ttggaaggggagtaccgccaacttcattcacgcttaaggactcactcggaaagcatagca
ttctatggtggggaaaccagggaagaatctcatatacaacaaaagttcaagaatcttgtt
actcatatgagtgacgtccttcatgatcactggtggtttggcatgatccaagattttctg
ctgaagtatcttggtgccacagttgctgttattctgatcatcgagccattcttctctggg
catctaagacctgatgactcgaccttagggagagcagagatgctaagcaatataagatat
cacaccagtgtcattatttctctctttcaggcgttaggaacactttctataagttccagg
cggctcagccgactcagtggttttgctgaccgaatccatgagttgatggctgtctcgaga
gaactcagtggtgatgataaaacatctttacagagaaatagaagcagaaattaccttact
gaggctagctatgttgagttttcgggtgtcaaggttgttactccaacgggaaatgttttg
gtggaggatctcacccttcgagttgagcaaggatctaatcttcttattacaggtcctaat
ggaagtggcaagagttcccttttccgagtactaggaggtctatggcccctggtgtctggc
cacattgtgaagcctggagttggttctgatcttaacaaagagatcttctacgtgccccaa
cggccctatatggcagttggaacacttcgtgaccagttaatatatcctcttacgtctgat
caagagactgtaccgctcactgagactggaatggtggagctattggaaaatgttgaccta
gaatatttattggatcgctaccgacctgacaaggaggttaattggggtgatgaattatct
cttggagagcaacagagattgggaatggccagactgttctaccacaaacctaaatttgca
attcttgatgagtgcacgagtgctgtgacaactgatatggaagaacgttttgctgctaag
gttcgagctatgggaacttcttgcataacaatctcccatcgtccagcccttgttgcattc
catgacgttgttctgtcattagatggagaagggggatggagtgttcactacaagagggac
gactctgcacctctgacggacgctggagttgattcagcgaaaatttcagagaacgatcgt
caaaatgatgcgatggttgttcaacgagcgtttgctgcagctagaaaggaatctgccact
actaattcaaaggctcaggcgtacttgacacagtcaattgcaaaatcaccagttgttgat
aaaagtgttgtgttgcctcgttttcctcaacctcgaacatcgccaagggcgttgccatta
agagtagctgcaatgttaaacacattgatacccactctatttgacaaacaaggaggacaa
ctgcttttggttgcttgccttgtcgtctcaagaacattaatctctgaccgaatagcctct
ttgaatgggaccactgtgaagtatgtcttggagcaagataaagccgcatttgttcgtttg
attggtttgagtgttatccaaagtagtgcatctgctgtcattgctccttcattaaagcat
ctaacgcagaggctagctttagggtggaggattcgtttgactcaacatctgctacggaat
tacttgagaaataatgcgttttacaaggttttccacatgtcaggcaatactattgacgca
gaccagagactcactcgtgacctggaaaagttgaccactgacttgtctggacttcttact
ggaatggttaagccatcggttgatattctgtggttcacctggaggatgaagctattgact
ggtcaaaggggagttgccatactttacacatatatgttacttggtctgggtttcctgaga
cgttttgctcccgattttggtgatctagccggtgaagaacagcagcttgaggggaagttt
aggtttatgcacgagagactgaacactcatgctgaatccatcgccttctttggaggcgga
gctcgagaaaaagctatggttgacacaaaattcagggcactactggaccactctctcatg
ctcttgaagaagaaatgggtgtatggcatacttgatgatttcgtgacaaagcaacttccc
aataatgtgacttggggattgagtttgttgtatgctttagaacacaagggagatagagca
cttgtctccactcaaggtgaattggcacatgcattgcggtatctagcttctgtcgtgtct
caaagctttatggcgtttggtgatattcttgaactacacaagaagttccttgagctctct
ggtggtattaacagaatttttgagctcgatgagtttttggatgcttctcagtcaggtgtt
acctcagaaaatcacacaagccgcttggattctcaagatcgaatatccttttcagaggtg
gatatcattacccctgcgcagaagttaatggctagccagttgtcatgcgaaataattgca
gggaaaagcctgctcgtcacaggaccaaatggtagtggaaagacttcagtatttagagtg
cttagagatatatggccaactgtatgtggaagactcgccaaaccatcattggatatcaaa
gaacttgggtcagggaatggcatattttttgtgccgcagcgaccatatacatgcttaggg
acgctgagagatcagattatataccctctatctaaagacgaagcagagaaaagagccgct
aagttctactacaccaataatggagaaagctcaacagaagcgggaagcgttctggacgct
catctgaaaaccatcctggagaatgttcggttagtgtatcttttggaaagagatgaaagt
ggttgggatgctacaaccaactgggaagacatattatctcttggagagcaacagaggctt
ggcatggcacgtttattctttcacagacccaagtttggaatcctagatgaatgcaccaac
gcgacgagtgttgatgttgaggaacagctctacagggtagcgaaagacatgggagttact
ttcataacctcatcacaacgtccggcgttgataccgttccactcattggaactaaggctg
attgacggagaaggaaactgggagctgcgatctattgaacagacggcagagtaa
DBGET
integrated database retrieval system
