Raphanus sativus (radish): 108862408
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Entry
108862408 CDS
T06014
Name
(RefSeq) lycopene beta cyclase, chloroplastic
KO
K06443
lycopene beta-cyclase [EC:
5.5.1.19
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00906
Carotenoid biosynthesis
rsz01100
Metabolic pathways
rsz01110
Biosynthesis of secondary metabolites
Module
rsz_M00097
beta-Carotene biosynthesis, GGAP => beta-carotene
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00906 Carotenoid biosynthesis
108862408
Enzymes [BR:
rsz01000
]
5. Isomerases
5.5 Intramolecular lyases
5.5.1 Intramolecular lyases (only sub-subclass identified to date)
5.5.1.19 lycopene beta-cyclase
108862408
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GFIT
Motif
Pfam:
Lycopene_cycl
DAO
Pyr_redox_2
FAD_oxidored
NAD_binding_9
Thi4
Trp_halogenase
Pyr_redox_3
NAD_binding_8
HI0933_like
FAD_binding_3
GIDA
FAD_binding_2
Pyr_redox
Motif
Other DBs
NCBI-GeneID:
108862408
NCBI-ProteinID:
XP_018492024
UniProt:
A0A6J0P633
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Position
5:complement(3568837..3570724)
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AA seq
494 aa
AA seq
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MDTLLRTPNKLEFFIPQFHGFERLSSNGPNPSRVKLGLKKRAIKSVSSSTSSALLDLVPE
TKKENLDFDLPLYDTSLNKLVDLAIVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNN
YGVWVDEFEAMDLLDCLDTTWSGAVVYINDGAEKDLSRPYGRVNRKQLKSKMLQKCIANG
VRFHQAKVTDVVHEEINSTVVCSDGVKIQASVVLDATGFSRCLVKYDKPYNPGYQVAYGI
VAEVDGHPFDVDKMVFMDWRDKHLDPYPEVKERNSKIPTFLYAMPFSSNRIFLEETSLVA
RPGLRMEDIQERMVARLKHLDINVKRIEEDERCVIPMGGPLPVLPQRVVGIGGTAGMVHP
STGYMVARTLAAAPIVANAIVRYLGSTKGDQLSAEVWRDLWPIERRRQREFFCFGMDILL
KLDLDATRRFFDAFFDLEPRYWHGFLSSRLFLPDLVFFGLSLFSHASNTSRLEIMTKGTV
PLAKMINNLVKDRD
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atggatactcttttgagaacacccaacaagctcgaatttttcatccctcagtttcatggg
tttgagagattaagcagtaacggtccaaacccttcaagggttaagcttggtctcaagaaa
agggcaatcaaaagcgttagcagtagtacaagtagtgctctgttagatcttgttcctgaa
accaagaaggagaatctcgactttgatctccccttatacgacacttccctcaacaaactc
gtcgacctagccatcgtcggcggcggtcccgctggtttagccgtggctcagcaggtctcc
gaggctggactctccgtctgctccatcgacccttctcccaagctcatctggcctaacaac
tacggagtctgggtcgacgagttcgaagccatggacttgctcgactgcctcgacaccact
tggtccggcgccgtcgtctacatcaacgacggcgccgagaaggatctgagcaggccttac
gggagagtcaaccgtaaacagctcaaatccaagatgcttcagaaatgcatcgccaacggc
gttaggtttcatcaggccaaggtcactgacgttgttcatgaggagattaactccactgtg
gtgtgcagtgacggtgtgaagattcaggcttctgttgttcttgacgctactgggttttca
agatgcttggtgaagtatgataagccttataaccctgggtatcaagtggcgtatgggata
gtggctgaagtcgatggacacccgtttgatgtggacaagatggtgttcatggactggaga
gataagcatcttgatccgtaccctgaggttaaagaacggaacagcaagatccctacgttc
ttgtacgcaatgccgttttcttccaacagaatatttcttgaagagacgtctctggttgct
aggccgggcttgaggatggaagacatccaagagagaatggttgctaggcttaaacatttg
gatatcaacgtgaaaaggattgaagaagacgagcgttgtgtgatccccatgggaggtcct
ttaccggtcttgcctcagcgtgtagtcggcattggaggtacggcggggatggtgcatcct
tctacaggttacatggtggctaggactcttgcggctgcgccgatagttgcaaacgctata
gtgaggtaccttggttctactaaaggagatcagctatcggctgaggtgtggagagacttg
tggcctatagagaggaggagacagagggagttcttctgttttgggatggatatactgctg
aagcttgatttggatgctactaggaggttctttgatgcgttctttgacctggagccgcgt
tactggcatggtttcttgtcgtcgaggctgtttcttccggacctggtgttctttgggttg
tcgctcttctcgcatgcttctaatacctcgaggttggagatcatgactaagggaactgtt
cctcttgctaagatgatcaacaatctggtaaaagatagagactaa
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