Raphanus sativus (radish): 130494815
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Entry
130494815 CDS
T06014
Name
(RefSeq) exopolygalacturonase clone GBGA483-like
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Module
rsz_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
130494815
Enzymes [BR:
rsz01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
130494815
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pectate_lyase_3
Beta_helix
Motif
Other DBs
NCBI-GeneID:
130494815
NCBI-ProteinID:
XP_056841592
UniProt:
A0A9W3BQN4
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Position
5:complement(2895219..2897092)
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AA seq
426 aa
AA seq
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MVGLRRAKTVLLVLVVAILNTIANGAPLDPGPKGSGAAAPTGPAGSGGALDVKAAGAKGD
GTTDDTAAFLAVWKTACEAAGPSTITMPKGDYLVNNIEFLGPCKGPVTLEMHGNMKAPAT
VGATKPNSGWIDFTNLADFTLNGNGAIFDGQGSLAWKANDCAKTGKCNSLPINIRFTGLT
NSKIIGITSTNSKLFHMNVLNCKNVTLEKIGIDAPPESLNTDGIHIGRSIGVNLLGAKIK
TGDDCVSIGDGTENLIVENVECGPGHGIAVGSLGRYPNEQPVKGVTVRKCLIKNTMNGVR
IKTWPGSPPGIASNIIFEDITMDNVSTPVLIDQEYCPYADCKVGVPSKVKLSDVTFKNIK
GTSATKIAVKLICSSGTPCTNVALADINLVHKGAEGPAVGACANMKPVLTGQMIPPACTE
IAKSGP
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atggtgggtttgcgcagagcaaagacggtacttcttgtactagtagtggctattttgaac
acaatagcaaacggggcaccccttgatccaggacccaaaggaagcggcgcagctgcacca
acaggacccgcaggaagtggtggagcacttgacgttaaagcagcaggagccaaaggagac
ggaacaaccgatgacactgcggcatttttggctgtatggaaaacagcgtgtgaagcagca
ggaccgagcacgattacaatgccaaagggtgattatttggtgaacaacatagagttctta
ggtccgtgcaagggtcctgtcactttggaaatgcacggcaatatgaaggctccggctacg
gtcggtgccactaagcctaacagcggatggattgattttacaaatcttgctgatttcact
ttgaatggaaacggagccatttttgacggtcaaggctccctcgcttggaaggccaatgac
tgcgcaaaaactggaaaatgcaactctctccccatcaacatacgattcacgggtctcaca
aactccaaaattattggcataacatcaacgaacagcaaacttttccacatgaacgttctc
aactgcaagaacgtaactcttgagaaaattggtattgatgcaccaccggagagtctcaac
actgatggtatccacattggaaggtccatcggcgtgaacttactaggggcaaagattaaa
acaggagatgactgtgtttccataggagatggtactgagaatctcattgttgagaatgtg
gaatgtggaccgggacacggcattgccgtagggagtctaggaaggtaccctaatgagcaa
ccagtcaaaggagtcacagtgaggaaatgcctcatcaagaacaccatgaatggtgttcgc
atcaagacatggcctggatctcctcctggtattgcctccaacattatttttgaggatatc
acaatggacaatgttagcactcccgttctcatcgaccaagagtactgtccttatgccgac
tgcaaagttggggtaccttctaaggtgaaattgtcggacgtgaccttcaagaacattaag
ggcacatcagcgacaaagattgctgtgaaattaatctgcagctcaggcacgccttgcact
aatgttgctcttgctgacatcaacttggtccacaaaggtgcagaaggaccagctgtaggg
gcctgtgctaacatgaagcctgttctcaccggacagatgattccacctgcttgcactgag
atcgctaaatcgggtccttga
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