Raphanus sativus (radish): 130496787
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Entry
130496787 CDS
T06014
Name
(RefSeq) polygalacturonase-like
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Module
rsz_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
130496787
Enzymes [BR:
rsz01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
130496787
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GFIT
Motif
Pfam:
Glyco_hydro_28
Pectate_lyase_3
Beta_helix
DUF4135
Motif
Other DBs
NCBI-GeneID:
130496787
NCBI-ProteinID:
XP_056845226
UniProt:
A0A9W3C171
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Position
6:1511139..1518542
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AA seq
397 aa
AA seq
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MGAYFGVSTIFIFCLLGFSANAEVFNIGSSSGSDITQALLKAFTSACQSLSPSKVVIPKG
EFKLGEIEMRGPCKAPVEITLQGTVKADGNAIQGKEKWVVFGNMNGFKLNGGGVFDGEGN
AAWRRVNNCHQTFNCKKLPISIRFDFVENAEIKDISSIDAKNFHINVLGAKNMTMSNIKI
TAPEDSPNTDGIHLGRSDGVKILNSFISTGDDCISVGDGTSNLHVEKVTCGPGHGISVGS
LGRYGKEQDVSGIRVVNCTLQETDNGLRIKTWPSAACSTTASDIHFEDIIVKNVTNPILI
DQEYCPWNQCNKKKASTIKLVNISFKNVRGTSGNKDAVKLLCSKGYPCQNVEIGDIDIKY
SGADGPATFQCSNVSPRLLGAQSPEACSSPVTKLPGQ
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcgtattttggagtttctacaatatttattttctgtttgctggggttttcagcc
aatgccgaggtattcaacattggttcctcttcaggttctgatattactcaggcacttctg
aaagcattcacatccgcatgccaatctctctcaccgagcaaagtggtgatcccaaaagga
gagttcaagcttggtgagatcgagatgaggggtccatgcaaagctccagtcgagatcacc
cttcaaggcactgtcaaagctgacggtaacgcgatccagggaaaggaaaaatgggttgtc
ttcggcaacatgaatgggtttaagttgaacggaggtggagttttcgacggtgaaggaaac
gcagcttggagaagagtcaataactgccaccagactttcaactgcaagaaacttcccatc
agtataaggtttgatttcgtggagaacgctgagatcaaagacatatcatcgatagacgcc
aagaacttccacatcaacgtgctcggagccaagaacatgaccatgagtaacatcaagatc
accgctccagaagacagtcccaacactgacggtatccatttgggaagaagcgacggagtc
aagatccttaactccttcatctccaccggagacgactgcatctccgttggagatgggacg
agcaaccttcacgtggagaaagtcacgtgcggtccaggacatggaatcagcgtgggaagc
cttggaaggtacggaaaagagcaagatgttagcggcattagggtcgtgaactgcacactc
caagagactgacaacgggctgaggatcaagacatggccgtctgctgcttgctctaccact
gcctccgatattcatttcgaggatatcatcgtcaagaacgttaccaacccaatcctcatc
gaccaagagtactgcccttggaaccaatgcaacaagaagaaagcatcaacgattaagctt
gtgaacataagcttcaagaatgtcagaggaacatcagggaacaaggatgcagtgaagcta
ttgtgcagcaagggatatccatgtcagaacgtcgagattggagatattgatattaagtac
agcggagcagatggtccagctactttccagtgctcaaacgtaagtcccagactcttggga
gctcagagccctgaagcttgcagcagccccgtgaccaaactacccggccaataa
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