KEGG   Rissa tridactyla (black-legged kittiwake): 128904282
Entry
128904282         CDS       T09443                                 
Symbol
POLQ
Name
(RefSeq) DNA polymerase theta isoform X1
  KO
K02349  DNA polymerase theta [EC:2.7.7.7]
Organism
rtd  Rissa tridactyla (black-legged kittiwake)
Brite
KEGG Orthology (KO) [BR:rtd00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rtd03400]
    128904282 (POLQ)
Enzymes [BR:rtd01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     128904282 (POLQ)
DNA repair and recombination proteins [BR:rtd03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   DNA polymerases
    128904282 (POLQ)
SSDB
Motif
Pfam: DNA_pol_A POLQ_helical HTH_61 DEAD Helicase_C ResIII HHH_5 DUF4332 Helicase_dom4_arc
Other DBs
NCBI-GeneID: 128904282
NCBI-ProteinID: XP_054044363
LinkDB
Position
1:complement(131507949..131564811)
AA seq 2618 aa
MARREDGGVTPNAVAAASAAGLRGGSLGGPAPSRGAGKAAPLGSAAPCRPVLSPPPGLDL
SLRGSGSPGGSSTGQYQQLNIPEDQADKLLLASWGLPKAVLEKYHSLGVVQMFEWQAECL
MLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLETRKKALLILPFVSVAKEKKRFLQAL
FQEVDVRVEGYMGSMSPPGRFSALDVAVCTIEKANGLINRLIEENKMDSLGVVVVDELHM
LGDPHRGYLLELLLTKVRYVTEKVAKRQVKMTSPRFDGVQIVGMSATLPNLGLLASWLDA
ELYCTDFRPVPLKEWVKIGSKIYDSSMNLVREFQPKLQLKGDEDHVVSLCYETVCDGRSV
LLFCPSKNWCEKLADIIAREFYSLQQAENSAKTSALAPVVVDREGIDEILDQLKRSISGL
DSVLQRTLPWGVAFHHAGLTFDERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVIIRT
PMFGGKLLDILTYKQMAGRAGRKGVDTEGESILVCKPSERSKGAALLQGSLKPVCSCLLR
REGEGVASSMKRAILEIIVGGVASTPDDVQTYASCTLLASSLKESKWGNEEVQDKVQTGP
IEACVAWLLENEFIQVLESGNDVTAKVYHPTHLGSATLSSSLSPTEAMEIFADLQRAMKS
FVLENDLHIVYLVTPVYEEWTTIDWYQFFCLWEKLPASMKRVAELVGIEEGFLARSVKGK
IIAKTEKQHRQMAIHKRFFTSLALLDLISEVPLKDMTKKYGCSRGQLQSLQQSAATYAGM
VTVFCNRLGWHNMELLLSQFQSRLTFGVHRELCDLVRVSLLNAQRARTLFNAGFVTVADL
AKASPDDVAAALTNSVPFKSVRRAVDEDEESAEERRTVRSVWMAGMKGLTEREAASLIVE
EARGLLQQDLALMGVHWNPESFLETDTSSMISSESELEDSLRRSESSRVLNKKGCRAQHL
NGLGLQTRNLSNIKKGYKRQLSSSTENSRFESEVPGNDDIVCSARKRPNMCRDNENIEGI
SLVKTKTDSRKAIPELPSEQGKTPTLRTKSSASRLIKSTDMHLNRTRNKNTASKLQTSLL
EDSNRLSIDIQKPPAFHPTVSTDNFFSDQNNKEFMETGSVTHKVSNSVQMREINFGRKDK
MEGLFTEPTTTNEGMPKGRACFQAPVTLKGTPHINVEAHNIVGSLAPGSTRTQRNENTDD
KQNKINKMQTDASCAEAMIGRQQIALDTDHGNVTASCSGSGDTHRGSRIRKPVHFCPGED
KSCHIQIQSGGKNGSENPNAILLQAGALQKANSHPKGFLKDSLVKSRGVCNADDVQNGPS
SDLFSDSRDFEESFQLDTQTEMIIKQEGAAGITGQQGIQGSELAAIPRQEISKKLNTSRT
ENATDGRQAATVRKLGLSSVVATNNITKNTAQHCSNKVLESGGLNLQPVAMEIESARCLK
DSDFSVTDSQLHSFLQDFHTQNSVKRESVSKDLSKATSPFSREHIVQVECHPVPETSLNM
SGSLLFDDSFSNGSDLSAVHVTETDRKDPVEKQEALLPPDCLLQNLRSVHSKFDVCGNQK
EHEDHAHLNNVSLAFSDLIAEVLDHANSPSFLEDLPSPFHGQSVLRNPVISNNDHRPKDL
VGDQGEKLQRSQQALDKKTHPMVWTDCSFELSPGLQDVLDKWPSPSGIEPVSVSSCLKGK
LAAPIVNQEPDPVFKSDCLDSDLNQPERLPNCQDLKSSFEVETENLDLQKTDCVTLPVKG
SNSKLCPPPDSNNVLIPPTPPQELFPKSSISLSVKSGRKRQVACMNKGQLIQPQQNNKGN
AEQQVKTLQVKLGSVDPSETDEIKDDSTIDQGFSLQLSQDVFPLVPLSAESFTIIDVASD
KALFQTFVAEWKEKSRFSISVACERTKCLMSPKSTIGGKFKKVSSPQWMQVKDDGFPVQG
CEDILVVGLAVCWGGKDAYYISLQQIQDQTEISMSLAPPPLDKNLSVTERLYHLQLYLQK
KPKQERSLVMYDFIQHYKTLVMACGISLEGSFEDPKVACWLLDSGSKERTLHNMVTNFLP
NELPLLEGVGTGQGVQSLGLSASGDHSGRYRAATESVLIFNVMNQLRNELQKENLTDVFS
KVEMPTHYCLALLELNGIGFSTTAYETQKQVMQAKLSEIETKAYQLAGHSFSLTSPDDIA
EVLFLELKLPQNGDVKVQGNKKTLGYTRRATAKGSRVRLSKQLSTTKDVLEKLKTLHPLP
GLILEWRRINNAITKVVFPLQREKRLNSALGMERIYPVSQTHTATGRITFTEPNIQNVPR
DFEIEMPTVVEESPPSRAHGNVNSHALSGGRCRKRSSILPNGLKFQAEDRSEERGIPFSV
SMRHAFVPFPGGLILAADYSQLELRILAHLSCDCRLIQALNGGTDVFKSIAAEWKMIDPE
AVGDRTRQQAKQICYGIIYGIGAKSLGEQMGIDENEAANYIESFKSRYTGIQKFLRETVK
SCRRDGFVQTILGRRRYLPAIKDPNPYSKAHAERQAVNTTVQGSAADIVKTATVNIQRRL
EAFSSVIKSHGHLESSFQRDKTGKLARKSNRRTLHPISGGFFILQLHDELLYEVAEDDVI
QVAQIVKHEMENAIKLSVKLNVKMKIGPSWGALQDLEL
NT seq 7857 nt   +upstreamnt  +downstreamnt
atggcgcggcgggaagatggcggcgtcaccccgaacgccgtcgccgcagcttcggccgcg
gggctccgcggcggcagcttgggcggcccggccccttcccgcggggcggggaaggccgct
ccgctcggctccgccgctccctgccggcctgtgctgagccccccgcccggcctcgacctc
tccctgcgcggcagcgggagccccggcggcagctcgacagggcaatatcagcagttaaat
attcctgaagaccaagcagacaagttgctccttgcaagctggggtcttcccaaagcagtt
ctggagaaataccacagcctgggagtagtacagatgtttgaatggcaagcagaatgcctg
atgctcggacaagttctggaagggaagaacctagtttactcagctccaacgagtgctgga
aagactcttgttgcagaattgcttattttgaagcgagtcctggagactcgtaagaaagct
cttctcatccttccctttgtctctgtggccaaggagaaaaaacgttttttgcaggccctg
tttcaggaggtggatgtgagagttgaaggctacatgggaagcatgtctcctcctggacgt
ttctctgccctggatgtggctgtctgcaccattgagaaagccaacggtctaatcaataga
ctaatagaagaaaacaaaatggactcactgggagtggtggttgtggatgagttgcacatg
ctgggagaccctcatcgaggatatctgctggaactccttttgaccaaagttagatatgtt
acagagaaggttgctaaacgacaggtgaagatgaccagtccccgttttgatggggtacag
atagtaggcatgagtgctaccctccctaacttgggactcctagcctcatggttagatgca
gagctatactgtacggattttcgccctgtgcccctcaaggaatgggtgaaaattggcagc
aaaatttatgactcctccatgaatttagtgcgagaattccagcccaagcttcaactgaag
ggagatgaagaccatgttgtgagcctgtgttatgagactgtttgtgatggccgttcagtc
ctgcttttctgtccatccaagaattggtgtgagaagctggcagacatcattgccagggaa
ttctacagtttgcaacaggccgagaattctgcaaaaacctcagcccttgccccagttgtt
gtggacagagaaggaattgatgagattctggatcagctaaagcgttctatctcaggcttg
gactctgtgcttcaacgtactttgccatggggagtggcatttcatcatgcaggtcttact
tttgatgaacgggacatcattgaaggagcctttcgtcagggcttgattagagtcctagca
gcaacctccacactgtcatctggagtgaatttgcctgcacgccgagtaattatacgaact
cccatgtttggtggcaaactgctggacattctcacttacaagcagatggctggcagggct
ggcaggaaaggagtagacacagagggtgagagcattttagtttgcaagccctcagaaaga
tcaaaaggagctgctctacttcagggatctctcaagcctgtttgcagctgtttgcttagg
agagaaggggaaggtgttgcttccagcatgaaaagagcaatacttgagatcatagttggg
ggagtggccagcactccagatgatgtgcagacctacgcttcttgcactcttcttgcatcc
agcttgaaagaaagcaagtggggaaatgaggaagtacaagataaagtgcagactggacct
atcgaggcttgtgtggcgtggttgctggaaaatgaattcatacaggttctggaatctggc
aacgatgtgacagcaaaggtttatcatccaacacatcttggctcagctactctttcctct
tccctttcaccaactgaagccatggaaatctttgctgacctgcagcgagctatgaaaagc
tttgttctggagaatgatctgcatattgtttatttggtcaccccagtgtatgaggagtgg
accacaattgattggtaccagtttttctgcttatgggagaagctgcctgcctcaatgaaa
cgtgtggctgagctggtggggattgaagaaggctttcttgctcgctctgtaaagggcaaa
ataatagctaaaacagagaaacagcatagacaaatggcaatccacaaaaggtttttcacc
agtctcgcccttctggatttaatcagtgaggttcccttaaaggatatgaccaagaaatat
ggctgtagtcgtggccagcttcaatccttgcaacagtctgctgccacctatgcaggaatg
gtaacggttttctgtaatcgactgggctggcacaacatggagctgttgctctctcagttc
cagagccgcctcacttttggggttcatagggagctttgtgacctggtacgagtgtctctg
ctgaatgcacagcgtgctaggacgcttttcaacgctggctttgtcacagtggctgatctt
gctaaagccagtcctgatgatgtggcagctgctctgacgaattcagtaccattcaaaagt
gttcgtagggctgtggatgaagatgaagaatcggcagaggagcgtcggactgtgcgcagt
gtctggatggctggaatgaaaggcttaaccgaaagagaagcagcttccctcattgtggag
gaagccagaggacttcttcagcaggatttggcactgatgggagtgcactggaacccagag
tcttttcttgagactgatacatcctctatgatcagcagtgagtcagaactggaagacagc
ctacgtagatctgagtcttccagggtgttaaacaaaaaagggtgcagagctcaacatctt
aatggtcttggtttgcagactagaaacttatcaaatattaaaaagggatataaaaggcaa
ttaagcagtagtacagaaaactccagatttgagagtgaagtcccaggcaatgatgatata
gtgtgcagtgctagaaaacggccaaatatgtgcagagataatgaaaacatagaaggaatt
tctctggtcaaaaccaagacggattccaggaaagcaattccagaactccctagtgaacaa
gggaaaacaccaacactgagaacgaagtcttcagcatctagattaataaaaagtacggac
atgcatttaaacagaacgagaaacaaaaatactgcttcaaaactgcagacgtcacttctt
gaagattcaaacaggcttagtatagacatacaaaagccacctgctttccaccccactgtc
tctacagataattttttttcagaccaaaataataaggaatttatggaaacagggtctgta
actcataaagtctcaaattctgtacagatgagggaaattaattttgggaggaaagataaa
atggaaggattatttacagagcctactaccactaatgaaggcatgcctaaagggagagca
tgttttcaggcacctgttacactgaagggtactccacacatcaatgtggaggcacataac
attgtaggaagtctagcacctggtagtactaggacacagagaaatgaaaacactgatgat
aagcagaataaaattaataaaatgcaaacagatgcaagctgtgctgaggcgatgattggt
aggcagcagattgctttagacacagatcacggtaatgtaactgctagctgctctggaagt
ggagatacccatcgtggcagcaggatacggaagcctgtgcatttttgtcctggtgaggat
aaatcctgccacattcagattcagagtggtggcaaaaatgggagcgaaaatcccaatgca
atattgttacaagctggagcactgcagaaagccaacagtcatcctaagggttttctgaaa
gactctctagtaaaatccagaggtgtttgcaatgcagacgatgttcagaatggcccatcc
tctgatctgttttctgactctagagactttgaagagagcttccagttggatactcaaact
gagatgataataaaacaggagggagcagctggaatcacgggacagcagggaatacaaggt
tcagagctggcagcaataccacggcaggaaatctccaagaaactaaacacttcacggact
gagaatgctactgatggaaggcaggctgcaacagttaggaaactgggcttatcgagtgtt
gtcgcaacaaataacattacaaaaaacacagctcagcactgcagtaataaagttttggag
tctggaggccttaatttacagcctgtggcgatggaaatagaatctgcacgttgccttaaa
gatagcgatttctcagtgactgactctcagctacacagttttctacaagacttccatacc
caaaattcagtgaaaagggagagtgtatctaaagaccttagtaaagcaacctcccctttt
agtagggagcacattgtacaagtagaatgccaccctgtccccgaaacaagcctgaatatg
agtggtagcttgctgtttgatgatagcttcagtaatggcagtgacctttcagctgttcac
gtcacagaaactgacagaaaggaccctgtggagaagcaagaggctttgcttcctccagat
tgtcttttgcagaacctaaggtctgttcacagtaagtttgatgtctgtggcaatcagaaa
gagcatgaggatcatgcgcaccttaacaatgtgtctctagcattctctgatctaatagct
gaagtcttagatcatgcaaactcgccatcttttctggaagatcttccttctccgtttcat
ggtcagtcagtattaagaaacccagtgatttctaacaatgaccacagaccaaaggattta
gtaggagatcaaggtgaaaagctccagagaagccagcaagctttagacaagaaaactcat
ccaatggtgtggactgactgctcgtttgaactaagcccaggattgcaggatgtgttagac
aaatggcctagtccctcaggcattgaaccagtttcagtaagctcctgtttgaaaggaaag
ttagctgctcctattgttaatcaagagccagatccagtttttaaatctgactgtttagat
tcagatttaaatcagccagagcgtttacccaattgccaggatttaaaaagctctttcgag
gttgaaacagaaaacttggatcttcagaaaacagactgcgtaacacttccagtcaaggga
agcaacagcaaattgtgtcctccaccagatagtaataatgtgcttattcctccaacacct
ccccaagaactttttccaaagagttccatttctctctctgtgaaatctggaaggaagagg
caggttgcctgcatgaacaaagggcagctgattcagccacagcagaataacaagggcaat
gcagagcagcaggtaaaaacactccaggtcaaacttgggagtgtagacccaagtgagact
gatgagataaaagatgattccactatagaccaaggcttttcactgcagctatctcaggat
gtttttccacttgttcccttaagtgctgaaagtttcactattattgatgtagcaagtgac
aaagcacttttccagacttttgttgcagaatggaaggagaaaagcagattctccatctca
gtggcatgcgaaagaacaaaatgtcttatgtctcccaaatcaacaattggtggcaaattc
aaaaaagtaagttctcctcagtggatgcaagttaaagatgatggatttcctgtccaaggc
tgtgaggacatcttggtagttggactggcagtatgttggggtggaaaagatgcctactat
atctctttgcagcagatacaagaccagactgaaatcagtatgagtttggccccaccgcct
ttggacaaaaacctgtctgtaacagagagactgtatcatctgcagctgtacctgcagaag
aagcccaagcaggagcgctcacttgtcatgtatgacttcattcagcactacaagacactg
gtgatggcttgtggcatctccttggaaggaagttttgaggacccaaaggttgcatgttgg
ctgcttgattctggctctaaggaacgtacacttcacaacatggtgactaactttctcccc
aacgagctacctctactggaaggggtaggcaccggccaaggggtgcagagcctggggctt
agtgccagcggagatcattctgggcgatacagagcagcaacagagtctgtgcttatcttc
aatgtcatgaaccaacttcgtaatgaattacagaaggaaaatctcacagatgtattttct
aaagtggagatgcccacccattattgcttggctctgctggagctgaatggcattggtttt
agcacaacagcgtatgaaacccagaaacaggtcatgcaagctaaactgagcgagattgag
accaaggcatatcagctggcaggccacagtttctccttgaccagccctgatgacattgca
gaggttttgttcctggagctgaagttgccacaaaatggagatgtgaaagttcaaggaaac
aagaaaactctgggttacacaagaagagcaactgctaaagggagcagggttaggttgagt
aagcagttgagtacaaccaaggatgttttggagaaattaaagacacttcacccattgccg
gggctgatattggaatggaggaggatcaacaatgccattactaaagtggtgtttccacta
cagagggaaaagcgattgaattctgcgctgggaatggaaaggatatatccagtgtcacag
actcacacagctacaggtcgaataaccttcacggagccaaatatccagaatgtgccaaga
gattttgagattgaaatgccaactgtggttgaagaaagcccaccctcccgagcccatgga
aacgttaattctcatgctctttctgggggcagatgtagaaagcgttccagtattttgcct
aatggcctaaaatttcaggctgaagacagatccgaagaaagaggaatacccttttccgtt
agcatgaggcatgcttttgttcccttcccaggtggcttaatcttggctgctgattactct
cagcttgaactgaggatccttgctcatttgtcttgcgactgtcgtctcattcaagccttg
aacgggggtactgatgtctttaagagcattgcagcagaatggaaaatgattgatcctgag
gctgttggagacaggaccaggcaacaagctaaacagatttgctatggaatcatctatgga
ataggagcaaaatctctaggcgagcagatggggattgatgaaaacgaagctgccaattac
attgaatccttcaaatcaagatacacagggattcagaaattcttaagggaaacagtgaag
agctgcagaagagatgggtttgtgcagaccatactgggaagacggagatacctgccagct
atcaaagatccaaacccctatagtaaagctcatgcagagcgacaggctgtgaatacgact
gttcagggatctgctgcagacattgtcaaaacagccactgtgaacattcagagacgcctg
gaagctttctcctctgtgatcaagtcccacggacatctggagagctccttccagagagat
aagactggaaagctagcgaggaagagcaacagaaggacattacatcccatcagcggaggt
ttctttatcctccagctccatgatgagctcctctatgaagttgcagaggatgacgtcatc
caggttgctcagatcgtcaagcacgagatggaaaacgccatcaaactctcagtaaaactg
aacgttaaaatgaaaattggacctagctggggagccctgcaggacctggagctctaa

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