Rissa tridactyla (black-legged kittiwake): 128906571
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Entry
128906571 CDS
T09443
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
128906571 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rtd03400
]
128906571 (MSH6)
DNA repair and recombination proteins [BR:
rtd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
128906571 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
128906571
NCBI-ProteinID:
XP_054049939
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All DBs
Position
3:complement(13828612..13846942)
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AA seq
1364 aa
AA seq
DB search
MSRQSTLLRFFPKATSASPRPPAPAPAPAPAPPQAGAGTRRRHSSGEQNGRQAATSPAGA
AGRAAARRKEAGEKGLGNGAAAKTPSVSCEYSAGDLVWAKMEGYPWWPCLIYNHPTEKTI
VRGKGKSSRVHVQFFDDSPTRGWVSIKYLKPYKGSSDEETLKGGMFYSTKPEIKRAMVLA
DDAMNKDKTKRLELAVCNEPSDTEEEEEEEEVEQMSESASGNSDDCNSEEDVKSNKRVAN
RESAIKAKRRRVLDSDSDHDGSDVEFKPDVKEVASSEEASSGVDENESTDTETDAESVAE
SPIKVPSKRKRREINKPAKRSSLENERSETPKRAATVSLEAKSKLTSFAAPESFESQANA
CSGGISGFAVWEHEKLDWLQEGKKKDAHRKRQGDPDYDPCTLYVPEDYLNKCTPGMRRWW
QLKSQNFDAVIFYKVGKFYELYHMDAVTGVNELGLIFMKGTWAHSGFPETAFGRFSDVLV
QKGYKVARVEQTETPEMMETRYKAMAHPTKFDKVVRREICRIITKGTQTYSVLDCDPSEN
HNKYLLCVKEKEDSSGQRVYGVCFVDTSVGKFYVGQFSDDRHCSRFRTLVAHYTPVQVLY
EKGNLSVDTQKILKGSLISCIQEGLISGSQFWSASKTLKVLLEEGYFKEKQDSENGCSLP
SVVKSLTSESDSLGLTPGENSELALSALGGCVFYLKKCLIDQELLSLANFEEYVPVDIDI
AKTMSSSSFFARTDQRMVLDGVTLMNLEVLQNGTNGTTEGTLLERIDSCCTPFGKRLLKQ
WLCAPLCNPKSINDRLDAVEDLLAVPDKMSEVSEHLKKLPDLERLLSKIHSIGSPLKSQN
HPDSRAIFYEEIKYSKKKIADFLSALEGFKVMNEIVDVMEEIASDFKSKVLKQLVTRKAK
NPDGRFPDLNAELKRWDTAFDHNQARKTGVITPKAGFDPDYDKALQDIKAVEEDLHNYLD
KQRKLLGFKSVLYWGAGKNRYQMEIPESAISRNLPEEYELKSTRKGYKRYWTKEIEKMLA
AMVNAEERRDAALKDCMRRLFYNFDKNSKDWQTAVECIAVLDVLMSLANYSQDGDGPLCR
PVILLPVDSAPPFLELKNSRHPCITKTFFGDDFIPNDIVIGSKDEDSSSEASCVLVTGPN
MGGKSTLMRQAGLLVIMAQLGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSE
TSSILQHATEHSLVLVDELGRGTATFDGTAIASAVVKELAERIKCRTLFSTHYHSLVEDY
SHNAAVRLGHMACMVENESEDPSQETITFLYKFIEGACPKSYGFNAARLADIPEEVIQKG
HRKAKEFEEVTVSLRVFRYLCLVVDGATSDANAVQKLTAMINHL
NT seq
4095 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgccagagcaccctgctccgcttcttccccaaggccacatcggcgtcgccgcgc
ccgcccgcaccggctccggctccggcgcccgccccaccgcaggccggtgcggggacccgc
cgccgccactcctcgggggagcagaatggccgccaggccgccaccagccccgccggcgcg
gcgggcagagctgcggcccggcgcaaggaggccggggagaagggcttggggaacggggcg
gccgccaagacccccagtgtctcctgcgagtattcagctggtgacttggtctgggctaag
atggaaggttatccttggtggccgtgtctcatatacaaccatcccactgaaaaaacaata
gtcagaggaaaagggaaatccagtcgtgtccatgtacagttttttgatgacagccctaca
aggggctgggtcagtataaaatatctgaagccatataaaggctcatcagatgaggagact
ctgaagggaggtatgttttatagcacaaagcctgaaattaaaagagcaatggtgctagca
gacgatgcaatgaataaagataaaactaagcggcttgaactggcagtatgcaatgaacct
tcagacacagaggaggaggaagaggaggaggaagtggagcagatgagtgaaagtgcatca
ggcaacagtgatgactgcaatagtgaggaggatgtgaagagcaacaagcgagtagcgaac
agggaaagtgccataaaagccaaaagaagaagagtgttggattctgacagtgatcatgat
ggctctgatgtagagttcaagcctgatgtgaaagaagtggcaagcagcgaggaagcaagt
agtggggtggatgaaaatgaatctactgacacagagacggatgcagagagtgttgcagaa
agtcccataaaagtcccttctaagcgaaagagaagagagataaacaagcctgccaaaagg
agtagcttagaaaatgaacgttctgaaactcccaaaagagcagcaacggtttctttagaa
gccaagtctaagctgacatcatttgcagcacctgaaagttttgagtctcaagcaaatgct
tgcagtggaggcatcagcggcttcgcagtatgggaacatgaaaagcttgattggctgcag
gaagggaagaagaaagatgcacacaggaaacggcagggtgaccctgattatgacccatgt
actctgtatgtacctgaggactaccttaacaagtgcacgccaggaatgcggaggtggtgg
cagctgaaaagtcagaactttgatgctgtgattttctacaaagttggaaaattctatgag
ttgtatcatatggatgctgtcactggcgtaaatgagttgggcctgatctttatgaagggt
acttgggcccattcaggttttccagaaactgcgtttggtagattctctgatgttctggtg
cagaagggctacaaggtagcccgtgttgagcaaacagaaacacctgaaatgatggaaacg
cgctacaaggcaatggcccacccaacaaaatttgacaaggttgtacgcagagaaatctgc
agaatcatcaccaagggaacacagacttacagcgttctggactgtgatccctctgagaac
cataacaaataccttctgtgcgttaaggaaaaagaagactcctctggacaacgtgtttat
ggggtctgctttgttgacacgtcggtggggaagttttatgtaggccagttttcagatgac
cgtcactgttcgaggtttaggactttagtagcccattacactcctgtgcaggtactgtat
gagaaggggaacctgtctgtggacacacagaagatactgaagggctcacttatatcttgc
attcaggaagggctgatctctggttcccagttctggagtgcatctaaaacactaaaagtc
cttcttgaagaaggatatttcaaggagaaacaagactctgaaaatggatgctctctgccc
tctgtagtcaaatctctgacttcagagagtgattcgctgggattaactccaggtgaaaac
agtgaattagctttgtcagctcttggggggtgtgtcttctatctcaaaaaatgtctgatt
gatcaggagctgttatcgctggcaaactttgaggagtatgtccctgtggatatcgatatt
gcaaaaactatgagttcaagtagtttctttgccagaactgaccaacgaatggtgctggat
ggagtcaccctgatgaacttggaagtcctgcagaacggaaccaatggaaccacagaaggt
actttgttggaaaggattgattcttgctgtacgccgtttgggaagcgactcctgaaacag
tggctctgcgctccgctttgtaatcctaaatccattaatgatcgtttagatgctgttgag
gaccttctggcagtgccagataaaatgtcagaagttagtgagcacctgaagaaacttccg
gatcttgaaaggctgctcagcaaaattcacagtattggatcgccacttaaaagtcagaac
catcctgacagcagggccatcttttatgaagaaatcaaatacagcaaaaaaaaaattgct
gactttttgtctgcactggaagggtttaaagtaatgaatgaaattgtcgatgtcatggaa
gaaattgccagtgacttcaaatctaaagtccttaagcagctagtcactcgcaaagccaaa
aatccagatggccgctttccagacttgaatgcagagcttaaaagatgggatactgctttt
gatcacaaccaggctcgaaagacgggagtgattactccgaaggcgggttttgaccccgat
tatgataaagcactacaggatattaaagctgtcgaggaagatcttcacaactacctggat
aagcaacgcaaactgcttggattcaaatccgtgctgtactggggggcaggcaaaaaccgg
tatcaaatggaaataccggaaagtgcaatatcacgtaatttgcctgaggagtatgagctg
aagtcaaccaggaagggatataaacgttactggaccaaggagatcgagaagatgctggct
gcaatggttaacgccgaagagcgcagagatgcagcactaaaagactgtatgaggcgtttg
ttttacaacttcgataaaaatagcaaggactggcagacagcggtggaatgcattgctgtg
ttagatgtcttgatgtcccttgctaactacagtcaagatggtgatggaccactgtgccga
cctgtaattctactgcctgtggatagtgctcctcccttcctggaacttaaaaattcacgc
catccatgcattacaaaaactttctttggggatgattttattcctaatgacatcgtgata
ggcagcaaagatgaagatagcagtagcgaagcttcctgtgtgttagtaactggcccaaat
atgggcggcaaatctacgctcatgagacaggctggtctcctggttataatggctcaactg
ggatgctacgtacctgctgaagtctgcaggcttacaccgattgacagagtatttacaagg
cttggggcctcagacagaattatgtcaggtgaaagtaccttctttgttgaattgagtgag
acttccagcattcttcagcacgcaacggagcattcccttgttcttgtggatgaactgggc
agaggcacagctacttttgacggaacagctatagcgagcgcagtggtgaaagaacttgca
gagagaatcaagtgccggactctgttctccacacactaccattccctggtcgaggattat
tcgcacaacgcggccgtgcggcttggccacatggcgtgcatggttgaaaacgagagcgaa
gatccaagccaggaaacaattaccttcctgtataagttcattgaaggagcgtgtccaaag
agctacggcttcaatgcagcgagacttgctgatattccagaggaagttattcagaagggg
cacagaaaagcaaaagagtttgaagaagtgaccgtttcactgagagtatttaggtacctg
tgtctggtggtggatggcgcaacaagcgacgcgaacgctgttcagaaacttaccgctatg
atcaatcatctttaa
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