Rissa tridactyla (black-legged kittiwake): 128914256
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Entry
128914256 CDS
T09443
Symbol
VCAM1
Name
(RefSeq) vascular cell adhesion protein 1 isoform X1
KO
K06527
vascular cell adhesion molecule 1
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
128914256 (VCAM1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
rtd04090
]
128914256 (VCAM1)
04091 Lectins [BR:
rtd04091
]
128914256 (VCAM1)
CD molecules [BR:
rtd04090
]
Proteins
128914256 (VCAM1)
Lectins [BR:
rtd04091
]
I-type lectins (Siglecs)
128914256 (VCAM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
V-set
C2-set_2
C2-set
ICAM_N
Ig_6
Receptor_2B4
DUF2808
Ig_C17orf99
Ig_4
V-set_CD47
Syndecan
ICAM1_3_5_D2
C1-set
Motif
Other DBs
NCBI-GeneID:
128914256
NCBI-ProteinID:
XP_054068994
LinkDB
All DBs
Position
8:34278890..34295118
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AA seq
632 aa
AA seq
DB search
MLKPMGRTRQAVLIILCILMTVKAFEMEIIPANRIVAQIGETLILTCNTTGCASPSFSWR
TQMDNPLGGTVNNHRTYSTLTMNPVSIVNSHDYLCTVFCGEQEKKEKSIKVELYSFPSDP
IIEIRPSSLVYGERVTVICKIPDVYPSDHLEVILKKDELVLHEENFYEDDSTNTETKTVT
YSFKYTSEDIGKEITCVAKLPIANMDFEPKERVTSQKLNANFGPQNTIITVSPDNPPMEG
DSLNLTCVTESNPSPQIIWRKHLADESIQHLIENNVLSIPDARFNDSGLYICEVINLVTN
KTEKATVDIVIQGAPNIAELSIEPSATVQEGENVSIQCSAESNPPPKIILRRKADSTDMG
PYSEGRVLVLSSVTFLHGGNYECVAENSFGESKSDITLNVEYGPKNTMISVIPATAVKEG
ETVTMKCTSSGNPAPVISWKKKKATGEYEKIFKDSTLTIQNVKSQDLGLYECEAYNQFGK
EEKVVNLLVQVPPQNITVLVYPSENVKEGENVTITCSTYSNPPSQMVLKKVHQEKEIILP
SVNGTFILYNVTKNDTGRYLLDVFNEVGNNIKVIEIAVVGRLEKPDQMIPLIIAFSCVAA
IAVPVVAILIYVSRKAKINGSYSLVKALRLKV
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgttaaaaccgatgggaagaacaaggcaagctgtgctaataattttgtgtatattaatg
actgttaaagctttcgaaatggagattatacctgctaacagaattgttgcacagattgga
gaaacactgatactcacatgcaatactactggctgtgcatcaccaagtttttcctggaga
acccagatggacaacccccttggaggaacagtgaacaaccataggacatactctaccttg
actatgaatccagttagcattgtcaattctcatgattatctgtgtactgtcttctgtggt
gagcaagagaaaaaagagaagagtatcaaagttgaactttactctttccccagtgatcct
atcattgagatcagaccatcatccttagtttatggagaacgagtcactgtcatctgtaaa
atcccagatgtgtatccttctgatcacctggaagtaatcctaaagaaagatgaacttgtt
cttcatgaggaaaatttttatgaagatgacagcacaaatacagaaactaaaactgtgaca
tattcatttaaatacacgtctgaagatattgggaaagagattacctgtgtggccaagtta
ccaattgctaatatggactttgaacccaaagaaagagtaacttctcagaaactgaatgca
aactttggtccacaaaatactatcattactgtatctccagacaacccaccaatggaagga
gactctctaaacctcacttgtgtgactgagagtaatccatcaccacaaataatttggaga
aaacatctggctgatgaaagcattcagcatctgatagaaaacaatgtcctttctattccc
gatgcccgtttcaatgattcaggactgtacatctgtgaagtaattaatctggtaactaac
aaaacagagaaagcaactgtggacattgttatacaaggtgctccaaacattgcagaactc
tccattgagccttcagcaacagttcaagaaggagaaaatgtttccatacaatgttctgct
gagagtaaccctcctcccaagattattttaaggagaaaagctgatagcacagacatgggg
ccatacagtgaagggagagttctcgttctttcatctgtgacgttcctacatggaggaaac
tatgaatgcgtagcagaaaatagttttggggaaagtaaaagtgatataacacttaatgtg
gaatacggaccgaagaatacaatgatctctgttatccctgctactgctgttaaagaagga
gaaactgtgacaatgaaatgtactagttctggtaatccagctccagtgatctcttggaag
aaaaagaaggccaccggggaatatgagaaaatttttaaagattcaactttaactatacag
aacgtaaaaagtcaagatctggggctttatgaatgtgaagcttataaccaatttggcaaa
gaagaaaaagttgtgaatttacttgttcaagttcctccccaaaatattactgtgttagta
tatccgtcagaaaatgttaaagaaggagaaaatgtcactattacatgtagcacatacagt
aacccaccatcacagatggtcctgaaaaaagtccatcaggagaaagaaattattctgcca
tcagtgaatggaacctttatactctacaatgtcaccaaaaatgatacaggcagatatttg
cttgatgttttcaatgaggttggaaacaacatcaaagtgattgagatagctgttgtagga
agattggaaaaaccagatcaaatgataccactaattattgcattctcctgtgtagcagcc
atagcagtacctgtagttgcaattttgatctacgtgtcaagaaaagcaaaaataaatgga
tcctacagtcttgtaaaagcactcaggctgaaagtgtga
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