Rana temporaria (common frog): 120909407
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Entry
120909407 CDS
T07929
Symbol
CLP1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120909407 (CLP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtem03019
]
120909407 (CLP1)
Enzymes [BR:
rtem01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
120909407 (CLP1)
Messenger RNA biogenesis [BR:
rtem03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
120909407 (CLP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
ATP_bind_1
CbiA
AAA_16
MMR_HSR1
AAA_24
nSTAND3
AAA_18
AAA_22
AAA_29
Motif
Other DBs
NCBI-GeneID:
120909407
NCBI-ProteinID:
XP_040177107
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All DBs
Position
8:171748798..171756188
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AA seq
440 aa
AA seq
DB search
MSEDVLSGTSEASSPWPSSTPSVPSTKFELERETELRLEVEGSAPVQLELMSGLAEVFGT
ELVKNKKYTFPPGSRAAVFTWHGCTVQLFGSPDTAYVSKDTPMLLYLNTHVALEQMRVQA
EREGERGPRVLVAGPSDVGKSTLCRLLLNYAVRIGRRPAMVELDVGQGSVSVPGTVGALC
VERPADVEEGFSTQAPLIYHFGSTTPGTNIKLYNKLTSRLAQVFNLRCDSNRRAAVSGCI
INTCGWVKGGGYQAIIHAASAFEVDVVIVLDQERLYNDLHRDLPHFVHTILLPKSGGASE
RSKECRRESRDQRVREYFYGPRGSLYPHAFEVKFSEVKVYKVGAPSIPDSCLPLGMSQED
NQLKLVPVTPGRDMAHHLLSVVPLEGGLPDESIEEKNVAGFIVSTGVDIERQTLTVLSPA
PRPLPKCVLLIMDIRFMDLK
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaagatgtcctcagcgggacctcggaggccagcagtccctggccgtcctctacc
cccagcgtcccctccaccaaatttgagctggaaagggagacggagctgcggctggaggtg
gaaggctcggcccccgtgcagttggaactgatgtcgggcctcgccgaggtgttcggcaca
gagctggtgaagaataagaagtacacgttcccgccggggagccgagccgccgtcttcacc
tggcacgggtgcaccgttcagctgttcgggagcccggacacggcttacgtctccaaggat
acccccatgctgctctacctcaacacccacgtggccctggagcagatgagggtgcaagcg
gagcgggaaggagagcgcgggccccgggtgctggtggccgggccatctgacgtgggtaaa
tcgacgctttgccgactgctcttaaactacgcggtgaggatcggccggcgcccagccatg
gtggaactagatgtcgggcagggctcggtgtcagtcccggggacggtcggggctctgtgt
gtggaacggccagctgacgtggaagaagggttctcgactcaggctccgcttatttatcac
tttggctccactacgccggggactaacatcaagctctacaacaagctgacctcccgcctg
gctcaggtcttcaacctgcgatgtgactccaatcgtcgagctgcagtcagcggctgcatc
attaatacttgcggttgggtcaaaggcggcggctatcaagccataatacacgccgcttct
gcttttgaagtggacgtcgtgatcgtgctggaccaagaacgtctgtacaacgacctccac
cgagacctcccgcactttgtccataccattctgctccctaaatctggcggagcttcagag
aggtccaaggagtgccggagggagtctagagatcagcgggtgcgggagtacttctacggc
cctcggggttctctctaccctcacgccttcgaggtgaagttctccgaggtcaaagtctac
aaagtcggagctccctcaatccctgattcctgccttcccctgggcatgtcgcaggaggat
aatcagctgaaactggtgccggtgacaccgggcagagacatggctcaccatctgctcagc
gtggtgcccctcgagggtggactaccagatgaaagcatcgaggagaaaaacgtggcaggg
ttcatagtcagtactggtgtggacattgaaaggcaaactctgacggtgctttccccggca
ccccgacctctgcccaaatgtgtcctgctcattatggacatcagattcatggaccttaaa
taa
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